BAC Information

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BAC

Clone NameMSMg01-049G03
Chromosome9 (Build37)
Map Location 10,667,794 - 10,668,483
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn5, LOC665154, LOC100039970
Downstream geneLOC665178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049G03.T7 (MSMg01no049_g03.b1)MSMg01-049G03.TJ (MSMg01no049_g03.g1)
ACCAG278858AG278859
length1,1651,245
length of high quality
(start - end)		777 (44 - 820)749 (83 - 831)
definitionCHROMAT_FILE: MSMg01no049_g03.b1 PHD_FILE: MSMg01no049_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:20 2005CHROMAT_FILE: MSMg01no049_g03.g1 PHD_FILE: MSMg01no049_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATTTATNNNNNNGACAGTGGGCGCTAAGACTCCTAAGGGAGAGGATC
CGCGGAATTCCTTAAATTATATGTTATCCTTTAGCCTTTTTATTAATGGG
ACTGCTATTAAGTCCTTTTCTGATAATCAAAGCTGCAATGAGAACTCTGT
CAGTCTCCCAAGTGTCACAGTTAATTGCTCTTAGATGGTAACCAGACTTT
CTCCTACTCAGAGCACATTCCAAGAGGTTGTAAATCAATTAACCAAAAGC
CATTAAAAGGGAACTAATGATTTATTATAGGTGTTAGGACAGAAGATATA
ATATCAACTGGGTTTACCTATACAAAACTTCACTAATAACTTATGGTTTT
AAACGTACAGTGAATCTGTGGAGACAGGTGATAGATGTTTAGCTAGATAA
TTACACCTAAGGGCTATGCATGTAAACATTCACTGTTGTAAACTTCTATT
TCAATTTATGATTTGATTTTTTGTGTGAAATTGTGATGAACTTTGTAACA
TGTGATCATGTATTCTGAAAGATGTATAAGTACTGAGGACAAAGAGATGA
GCAAGATAGATAGAGGAGACTTTTTTGTCTTTCCCCACTTACACAAGAAT
ATTTCCCCTTTGCCACTCATAGAATGTTTCCCTTTAATCGGGATCTTTTT
GCTTTTCCCCTTAGATCGCTTTTTGTAGGAAATGTTTTAAAACTTAGTAA
TAAACTCTATATCACTTCTCTAAATGTCTTCTCTTCCTGTGAATTCCTGA
GACTAGCAGGCTGAAATTTAGAGCCCAGCAGTTCTGCTGAGATAGAACAA
AGGCTGCATTGCTTAATCCTCCACTGTTAGGCTACAGGTGTTAATCTTCT
CAACCAGCAGTCTTTTACCCTCACAAAGAGCAAGAAAGTTTTTAGAACTT
TCTAAAAATTATCATCAGCCATTTCAGTATAATTAGAGAAACAAAAAAGC
CCCTAAAACTCAAAACTTAAAGCCCTTCCCCAAACCCCTCACTCTTGTTA
ATCCCCCCCCTACCTTTGCCCCCAGAAAAGAAAGCTTCCGGACCCCTGAT
CCCTAAAAAAAATATAAAAAGGGTTTTAAACCAATTTAAAATGGAAAATA
TTTGTTGAGTTTAAAAAAAAAAACTTAAAGTGGGGTATAGGTGTCCCCTA
GTTGTCATCATGTTC

NCCCTATGTTTNNNNNTTTGCATGGAGGCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATTAAAGTTATGTTGT
CAGTAATATTGGAAATTTAATATCCTCTATATATGAGTTTGTTATCACAG
AATAACTTTGCTTTGGGGATTCTATGTAGGACATTCACTTTGTCTTTGAA
TATTCACCACTAAATTTCTTTTTACTAATTTTTAATAATCACAGCTATTG
CTAGCTCTTAAACCAAATATAAAACTAAATTTTTACAATAATATGAAATA
CTAGATTTAAAAAATAAAACTATTTAATATGTAAAAATAACTACAACTTA
AAATACAAAAAAAAGGTATTTTATTAAAATAGAGCATTTTCCCATAAAGA
AATATTTGAATTATTCACCAAATATATCAACATTTCTGATTCCCAATTTC
TTAATTTATTTAATGACGGATTTAGGGAGAATTTTCCAAAGGATTTTCTC
CCTTAATATTTTATCAATTTATTAATACCAGATTGACCCAAATGATATTC
TTAATATACTGGAATATAACATCTGCTAACAAAATTATAATGCATAAGTA
AAAATGTTAAAAATAACATTTTACTATTGAATTTTTACATTATTTTTGTA
TTTTCTAACTACTTCAGGTTCAGTTAACTAGAAGTAAATTTCAGTTTTTC
TCAAGATTTTCTGAGTATACATGANATTCTAAGCTGGAGAGAATAATAAT
AATAGAATTTATTTAACATGAAAATCACAATTTACACATACTCATGTAAC
CTGAGGCTGCATGTGAAGTGTAAATAAACTTAGGCTGTTTTTTCTTTTTT
CACTGCATAAGTGAAAAAAAGGATTTTAACTGTTTTTCTAAAAAGTTTGT
TTANAAGGTGCTAAGTGAGCACGTGGCCAGGGCAGTGTTTGTGACTGAGG
ATAGTGAATTTCCCCTAAGGCTAACCACGCCCTTTTATTGATAATCTTCT
CCCATCTGTTTCGAAAAATTATTCATACCCCGAAAAAAGGAGGTGAAAAG
GAAAAAAAATGAACCCTGTAAATTTCGAACCCCCCTTGGACTTTGTCAAG
GGGAACAATGGCTACTCTGGTTTCTTGAAAATTTTGCCGGGAATTGGGCC
TGGAAATTTAACGACCAAACACCCGGTGTTTATTTTTTGAAGGGGAAAAA
GACACGGGAAAATGCCCCTTTGTGAAATAAAAATTTATAAAAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_g03.g1 MSMg01no049_g03.g1 CHROMAT_FILE:
MSMg01no049_g03.g1 PHD_FILE: MSMg01no049_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:20 2005
         (749 letters)



>mm_chr9_10667336_10668484
          Length = 1149

 Score = 1230 bits (636), Expect = 0.0
 Identities = 677/693 (97%), Gaps = 6/693 (0%)
 Strand = Plus / Minus

                                                                        
Query: 60   ttatcacagaataactttgctttggggattctatgtaggacattcactttgtctttgaat 119
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1148 ttatcacagaataactttggtttggggattctatgtaggacattcactttgtctttgaat 1089

                                                                        
Query: 120  attcaccactaaatttctttttactaatttttaataatcacagctattgctagctcttaa 179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 attcaccactaaatttctttttactaatttttaataatcacagctattgctagctcttaa 1029

                                                                        
Query: 180  accaaatataaaactaaatttttacaataatatgaaatactagatttaaaaaataaaact 239
            ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1028 accaaatgtaaaactaaatttttacaataatatgaaatactagatttgaaaaataaaact 969

                                                                        
Query: 240  atttaatatgtaaaaataactacaacttaaaatacaaaaaaaaggtattttattaaaata 299
            |||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||
Sbjct: 968  atttaatatgtaaaaataactacaacttaaaatac--aaaaaagctattttattaaaata 911

                                                                        
Query: 300  gagcattttcccataaagaaatatttgaattattcaccaaatatatcaacatttctgatt 359
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 910  gagcattttcccataaagaagtatttgaattattcaccaaatatatcaacatttctgatt 851

                                                                        
Query: 360  cccaatttcttaatttatttaatgacggatttagggagaattttccaaaggattttctcc 419
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 850  cccaatttcttaatttatttaatgacagatttagggagaattttccaaaggattttctcc 791

                                                                        
Query: 420  cttaatattttatcaatttattaataccagattgacccaaatgatattcttaatatactg 479
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790  cttaatattttatcattttattaataccagattgacccaaatgatattcttaatatactg 731

                                                                        
Query: 480  gaatataacatctgctaacaaaattataatgcataa---gtaaaaatgttaaaaataaca 536
            |||||||||||||||||||||||||| |||||||||   |||||||||||||||||||||
Sbjct: 730  gaatataacatctgctaacaaaattacaatgcataataagtaaaaatgttaaaaataaca 671

                                                                        
Query: 537  ttttactattgaatttttacattatttttgtattttctaactacttcaggttcagttaac 596
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 670  ttttactattgaatttttacattatttt-gtattttctaactacttcaggttcagttaac 612

                                                                        
Query: 597  tagaagtaaatttcagtttttctcaagattttctgagtatacatganattctaagctgga 656
            || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 611  taaaagtaaatttcagtttttctcaagattttctgagtatacatgaaattctaagctgga 552

                                                                        
Query: 657  gagaataataataatagaatttatttaacatgaaaatcacaatttacacatactcatgta 716
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551  gagaataataataatagaatttatttaacatgaaaatcacaatttacacatactcatgta 492

                                             
Query: 717  acctgaggctgcatgtgaagtgtaaataaactt 749
            |||||||||||||||||||||||||||||||||
Sbjct: 491  acctgaggctgcatgtgaagtgtaaataaactt 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 749
Length of database: 1149
Length adjustment: 10
Effective length of query: 739
Effective length of database: 1139
Effective search space:   841721
Effective search space used:   841721
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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