BAC Information

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BAC

Clone NameMSMg01-051I08
Chromosome9 (Build37)
Map Location 108,409,688 - 108,537,720
singlet/doubletdoublet
Overlap geneQars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2
Upstream geneCacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19
Downstream geneENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051I08.T7 (MSMg01no051_i08.b1)MSMg01-051I08.TJ (MSMg01no051_i08.g1)
ACCAG280254AG280255
length1,2631,365
length of high quality
(start - end)		263 (79 - 341)250 (78 - 327)
definitionCHROMAT_FILE: MSMg01no051_i08.b1 PHD_FILE: MSMg01no051_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:20 2005CHROMAT_FILE: MSMg01no051_i08.g1 PHD_FILE: MSMg01no051_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,409,688 - 108,409,950)(108,537,472 - 108,537,720)
sequence
NNCCCCACTGGGCGCTATAGACTACTATAGGGAGAGGATCCGCGGAATTC
CCCTGTTTCTATCTCTGCATTTAAAGGAGTATACCAAGTCTCTCCCACTC
CAGAACACCTGTCTCTTACTCGCCCAACACACCTCAACAGGTTTGTCTTG
GGTACCCAGTTGGTCCAATCAGTGCTTCCTGTGGCATGTTGATGCACCTT
GTTTGCATAAGATTTTAAAGAAATCATAGACCTTCCTATGAAGTCCCTTC
TGGCCTTTCTTTCGCTTCTCCTTGCTGTGTCCCAGTACGCACTTAAAAAG
TACCAGGTTTATGTGGTCCCTAGATAGGTAATTTTATATATTTTCTGCAG
TGATGTGGACCAGGACATTCAGGTAATCCATTTACGTTGCCATGACAATT
TTTTAGCTGTGACGTTGAAAACCGCGTCCGTAACTTTTGCTCTCCCACCA
TTTTACTATGTCCCCTTCTTTGTTCTCTATTCTAATATTCCACTCCTGAG
TCTATCTGTATTTTTGTCGTCAATTATCTTTTTTTTCTATGCCCATGTTT
ATCCTTTTATTCTTCTTTTTCACTCTCCCCTGTCTACTGTCTTTTATCCT
TTCCTTTCTTATTTTATTTGCTTGTTCCCTTTTCTTTTTTTTTTTCCCTC
TTTTTTTTTTTTTTCTCTCTTTTCTTCCTTTCTTTCCTCCTTTTTTTTTT
TCCTTCATTCCTTTCTCCTTCCCTTTCTTTTTTTTTTTTTTTTATTCTTT
ATACTCTTTTTTTCCCTTTTTATTTTTTTTTCTTCTTTCTTTCTTTTTTT
CTTTTCTCTCTTTTCCTCTCTTCTTTTCTCCCCTCTTTTTTTCCCCTTTC
CTTTTTTCTCATTTTTCTTTTTTTTTTCTTATTTTTCTTCTCTTTTTTCT
TCATTCACTTCTTTTCTTCTCTCCCTTTTCTCTTCTTCTCTTTCTTCTTC
CTTTTTCCTTTTTTTTTTTCTTCCCCCTTTTATATTATTTTTTTTTTTTT
CTTTTTTATATTTTTTTTTTTTTTTTTATTTATTTTATTTTTTTTTATTT
ATTTTTCTAATATTATATTTTTTTTCTATCCTTTTTCCCCCTTTTCTATT
TCTCTTTTCTTTCTTATTTCTTTTTCTTCTCTCTTCCCATTCTCTCTTCT
TTCTTATTTTTCTACTTTCCTTTCTCTTATCACATTTTACTTTTTCCTCC
TCTTCTATACTCTTCATTTCTTTCTTTTTTTCTCTTCATTTCCCCTTTCT
ATTTTTTTTTTTT

TTTTGCCAAGCGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTTTTATGTAGATCATGGCCTTAAACTGCCTGC
CTATGTCTCCCAAATTCACTTTAGTTCCCGAGCGCTCTGTTACCACTGGA
CTGGTGAGCAAGCACTCAGGATCTGCTTGCTTGTCTCTCTTAACCACTCT
GTCCTGCAGCACTGGGGTTACAAATAATGTGCACCTATTCCTGTCGTTCA
ACGGGTGCTGAGGATCTGAGTTCATGTGAGCCATCTTCCCCAGTCCCTTC
TCTATGTCCCTTCTTCTCCCTCCCCATACTGTTTGCACTTACGTCCTCTG
GAAGAACAGCCAGTGTTGTTAACCACTAAAGCCATCTCTCCAGTCTTTTT
TTTTACTTTTGTCTTTGTCTTGTTTTTGTCTCACTTCTCTTATTCCCCTT
CTTTTTTTCCTCCCCCCTCCATTTTTTATTTTTTCTTGCCTCTTAACTTC
TATCTTTATTTTTTTCTCTCCCTTCTTTTCTTTTTACTTCTTTTCCTTTC
TTTTTTTCTATTCTTTTCTTTTTTTTTTTATTTTCTTCTTCTCTTTTCCT
TTCCTTTTTTTTCTTTCTCTTTCTTCCCTTCTTCTTTTTTTTTTTTCCCT
TTCTTCATTTTCTCTTTTTCTTTCTTCCTTCTTCCCTTTTTTCTTTTCTC
TTCTCCCCTTCCTTTTCTTCTCCTCCCCTCTCCTTCTTCTCTTCTCTTTT
CCTTCTTCTTTCTTCCCCTCTTCCCTTCTTTCATCATCTCCCCTCTTTTT
TCTCTCCCTCTTATTCTTTTTTTCTTTTTTTCTTTCCTTTTCTTTTCCTT
CTTCTTCTTCTTTCTCTTTTCTTCTCCCTCTCTTTCATTCTCTCATTTCC
TTTCTTTTCTATTTTTCTTTTTCACTCTCTTCTTTTTCTTTTCCTTTTTC
TCTATTTTTTCCTCCCTTCCTCTCTTTTTCTTCTTCTCTTCTATTCTCCT
TTTTCCCATTCCTATTCTTTTATTTTATCTTTTTTCTCTCTTCTTTTTTC
TTCTCCCTCCTCCTTCTCTTCTCTTTCTCCTTCACCTCCCCTCCTTTTCT
CTCTCTTCTTTTCTTTCCCTCACCTTCCTCCCTCCTCCTCCTCCTCTCTT
CTCTTTTCCTCCTCTCCTCTTCTTTCTTCCCCTCTTTCCTCCTTTCCTCT
TCTCCCATCTCCTTTCCTTCTCTCTCTTCTTTATTCCTTTTATTTTCCTT
CTCTTCCTTCATCTTCCCTTTTACTTCTCTCCTTTATCTTTTCCTTCTCC
TCTCATTACTCTCCTATTTTCTTTCCCTCATTCTCCTTTACTCCTCTTCT
TCTCCTCCTCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_i08.b1 MSMg01no051_i08.b1 CHROMAT_FILE:
MSMg01no051_i08.b1 PHD_FILE: MSMg01no051_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:20 2005
         (263 letters)



>mm_chr9_108409488_108410150
          Length = 663

 Score =  462 bits (239), Expect = e-135
 Identities = 257/263 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtataccaagtctctcccactccagaacacctgtctcttactcgcccaacacacctcaac 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||
Sbjct: 201 gtataccaagtctctcccactccagaacacctgcctcttactcgcccaagaaacctcaac 260

                                                                       
Query: 61  aggtttgtcttgggtacccagttggtccaatcagtgcttcctgtggcatgttgatgcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtttgtcttgggtacccagttggtccaatcagtgcttcctgtggcatgttgatgcacc 320

                                                                       
Query: 121 ttgtttgcataagattttaaagaaatcatagaccttcctatgaagtcccttctggccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtttgcataagattttaaagaaatcatagaccttcctatgaagtcccttctggccttt 380

                                                                       
Query: 181 ctttcgcttctccttgctgtgtcccagtacgcacttaaaaagtaccaggtttatgtggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttcgcttctccttgctgtgtcccagtacgcacttaaaaagtaccaggtttatgtggtc 440

                                  
Query: 241 cctagataggtaattttatatat 263
           ||||| ||||| ||| |||||||
Sbjct: 441 cctaggtaggtcattctatatat 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space:   166116
Effective search space used:   166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no051_i08.g1 MSMg01no051_i08.g1 CHROMAT_FILE:
MSMg01no051_i08.g1 PHD_FILE: MSMg01no051_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:20 2005
         (250 letters)



>mm_chr9_108537272_108537921
          Length = 650

 Score =  443 bits (229), Expect = e-129
 Identities = 244/249 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatcatggccttaaactgcctgcctatgtctcccaaattcactttagttcccgagcgctc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 449 gatcatggccttaaactgcctgcctatgtctcccaaattcactttagtttttgagcgctc 390

                                                                       
Query: 61  tgttaccactggactggtgagcaagcactcaggatctgcttgcttgtctctcttaaccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgttaccactggactggtgagcaagcactcaggatctgcttgcttgtctctcttaaccac 330

                                                                       
Query: 121 tctgtcctgcagcactggggttacaaataatgtgcacctattcctgtcgttcaacgggtg 180
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 329 tctgtcctgcagcactggggttacaaataatgtgcccctattcctgtcgttcaaagggtg 270

                                                                       
Query: 181 ctgaggatctgagttcatgtgagccatcttccccagtcccttctctatgtcccttcttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctgaggatctgagttcatgtgagccatcttccccagtcccttctctatgtcccttcttct 210

                    
Query: 241 ccctcccca 249
           |||||||||
Sbjct: 209 ccctcccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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