Query= MSMg01no052_p12.b1 MSMg01no052_p12.b1 CHROMAT_FILE:
MSMg01no052_p12.b1 PHD_FILE: MSMg01no052_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:44 2005
(537 letters)
>mm_chr9_33445218_33446158
Length = 941
Score = 677 bits (350), Expect = 0.0
Identities = 386/400 (96%), Gaps = 4/400 (1%)
Strand = Plus / Minus
Query: 142 cacattgcagtggaagactacacgtctaggtttgaacaactccagttgatactgatggaa 201
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 941 cacattgcagtggaagactacacatctaggtttgaacaactccagttgatactgatggaa 882
Query: 202 gaaaaacaaaaaacaaaaacaaaaacaaaacaaaacaaaaaacaaaaattggtgaatgag 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 gaaaaacaaaaaacaaaaacaaaaacaaaacaaaacaaaaaacaaaaattggtgaatgag 822
Query: 262 gattgaagcatgaatctgagaagaactgaatgaatggatacgaaaatgttcaaagcacat 321
| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 821 ggtggaagcatgaatctgagaagaactgaatgaatggatatgaaaatgttcaaagcacat 762
Query: 322 tgtacaaaattctcaaagaactaagacaatttagaagtacaaaacaattcagtgtataag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tgtacaaaattctcaaagaactaagacaatttagaagtacaaaacaattcagtgtataag 702
Query: 382 acgccattttttaaaaaagctttatccacaacccgtgagcaatttacaattcatggaaat 441
| |||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 701 atgccattttttttaaaagctttatccacaacccatgagcaatatacaattcatggaaat 642
Query: 442 tcttaagcccttccctccaaaatcctatacttcagacaaaaatgaactttatagggacaa 501
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 641 tcttaagcccttccctccaaaatcctatacttaagacaaaaatgaactttatagggacaa 582
Query: 502 agttcttaaataaaaa----aagaagttataataatcata 537
|||||||||||||||| ||||||||||||||||||||
Sbjct: 581 agttcttaaataaaaaaaagaagaagttataataatcata 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 941
Length adjustment: 10
Effective length of query: 527
Effective length of database: 931
Effective search space: 490637
Effective search space used: 490637
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_p12.g1 MSMg01no052_p12.g1 CHROMAT_FILE:
MSMg01no052_p12.g1 PHD_FILE: MSMg01no052_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:44 2005
(529 letters)
>mm_chr9_33374233_33375161
Length = 929
Score = 1007 bits (521), Expect = 0.0
Identities = 527/529 (99%)
Strand = Plus / Plus
Query: 1 tttttcaaccagttccttacatacagcaggaaaatcttcaaagcacggaccattgaaaat 60
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 201 tttttcaaccagttccttacatacagcaggaaaatcttcaaagcacagagcattgaaaat 260
Query: 61 aaaatatttactcactatccagtaaatttattagcaactttatgtttttaataaccaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatatttactcactatccagtaaatttattagcaactttatgtttttaataaccaaca 320
Query: 121 ttattaaaatgtctaatgtatacacactgtgtctcatccatctcttgaaagacaatacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttattaaaatgtctaatgtatacacactgtgtctcatccatctcttgaaagacaatacat 380
Query: 181 agctgactaaaacaaaaccacaacaacagaaaaaaggaattactctaaattgtttccaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctgactaaaacaaaaccacaacaacagaaaaaaggaattactctaaattgtttccaat 440
Query: 241 cttcaaaaacaaactacaaagggaatagtgaactgcctgatttacaaggatcaaataaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcaaaaacaaactacaaagggaatagtgaactgcctgatttacaaggatcaaataaac 500
Query: 301 ctgtgacatattttgacaattttatcaagcacttttgccgagaaaatgagcctccctcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtgacatattttgacaattttatcaagcacttttgccgagaaaatgagcctccctcca 560
Query: 361 aagcatggtctttgtggcctctttccaacacctcacctcttctttccctttcagtgtctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagcatggtctttgtggcctctttccaacacctcacctcttctttccctttcagtgtctt 620
Query: 421 ccaggaagatgtttcttccagtcacatctacccctacaaagtactttgtgctcacaggaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaggaagatgtttcttccagtcacatctacccctacaaagtactttgtgctcacaggaa 680
Query: 481 ccatggcacagatgaccataaggatcagcgcccctgagtccttgcctac 529
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccatggcacagatgaccataaggatcagcgcccctgagtccttgcctac 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
