Query= MSMg01no053_e11.b1 MSMg01no053_e11.b1 CHROMAT_FILE:
MSMg01no053_e11.b1 PHD_FILE: MSMg01no053_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:09 2005
(316 letters)
>mm_chr9_98176160_98176875
Length = 716
Score = 580 bits (300), Expect = e-170
Identities = 312/316 (98%)
Strand = Plus / Minus
Query: 1 tccaccgttccttattgcagggcactcattaagtcataaaacagccccacatcccaagca 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tccaccattccttattgcagggcactcattaagtcataaaacagccccacatcccaagca 457
Query: 61 atggaaattccattggaaagccaatcttcaagaaggagaaagtacagacagctaagactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 atggaaattccattggaaagccaatcttcaagaaggagaaagtacagacagctaagactg 397
Query: 121 cactggaatttcaaagcaaatagataattttataaaatgacacacaagctatcaacacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cactggaatttcaaagcaaatagataattttataaaatgacacacaagctatcaacacac 337
Query: 181 aagttatattcccaggttccatagaaaagagaatacctccgtagtccctttgtctttcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aagttatattcccaggttccatagaaaagagaatacctccgtagtccctttgtctttcag 277
Query: 241 atctgaatttttcctcaggccatcgtcttcttctcttgcacattccctccctctgtcagg 300
|||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 276 atctgaattttttctcaggccatcgtcttcttctcttgtacattccctccctttgtcagg 217
Query: 301 gactggatctcccagg 316
||||||||||||||||
Sbjct: 216 gactggatctcccagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no053_e11.g1 MSMg01no053_e11.g1 CHROMAT_FILE:
MSMg01no053_e11.g1 PHD_FILE: MSMg01no053_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:09 2005
(424 letters)
>mm_chr9_46942580_46943403
Length = 824
Score = 801 bits (414), Expect = 0.0
Identities = 420/422 (99%), Gaps = 2/422 (0%)
Strand = Plus / Minus
Query: 4 atatttctctcaacactagggaatccttccttctagtgaagatatacttatgcaggaatc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atatttctctcaacactagggaatccttccttctagtgaagatatacttatgcaggaatc 565
Query: 64 aaatagatacattcaatcagaaaagctccccttttgattatattaatgagtcatattaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaatagatacattcaatcagaaaagctccccttttgattatattaatgagtcatattaaa 505
Query: 124 gtgagctcttctggctaaaaagagagcagagaaattatttgaacagcctcagttgctatg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtgagctcttctggctaaaaagagagcagagaaattatttgaacagcctcagttgctatg 445
Query: 184 cctgctcaaagtccttctcattgaggaagtttaaaaaaaaaacaccataaaacaaaaatg 243
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 444 cctgctcaaagtccttctcattgaggaagttt-aaaaaaaaacaccataaaacaaaaatg 386
Query: 244 tatgttaatcattatgatgagtgcaagttaccaggattcattgttaagaataactgtgta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatgttaatcattatgatgagtgcaagttaccaggattcattgttaagaataactgtgta 326
Query: 304 taatacatcatcatttatgagaga-ttttttttccaaaaggggaagcaattaccttttaa 362
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 taatacatcatcatttatgagagatttttttttccaaaaggggaagcaattaccttttaa 266
Query: 363 accttatgtgagctctgctttcacttctttctgccttctctctcccaacggtgatgtggg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accttatgtgagctctgctttcacttctttctgccttctctctcccaacggtgatgtggg 206
Query: 423 gg 424
||
Sbjct: 205 gg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space: 338225
Effective search space used: 338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
