BAC Information

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BAC

Clone NameMSMg01-054P23
Chromosome9 (Build37)
Map Location 65,529,542 - 65,529,772
singlet/doubletsinglet
Overlap geneOaz2
Upstream geneMegf11, Rab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2
Downstream geneZfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22, Usp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054P23.T7 (MSMg01no054_p23.b1)MSMg01-054P23.TJ (MSMg01no054_p23.g1)
ACCAG282784AG282785
length679745
length of high quality
(start - end)
231 (139 - 369)338 (76 - 413)
definitionCHROMAT_FILE: MSMg01no054_p23.b1 PHD_FILE: MSMg01no054_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:18 2005CHROMAT_FILE: MSMg01no054_p23.g1 PHD_FILE: MSMg01no054_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATTTCCAGAGGATCCGCGGAATTCAATTCTCTCCATAGTTTAGTTTT
TCACTCCAGTGAAGTCTCAACCCATTCATGTCTGTTCCCTTTCATCCCCA
CGGCCTGTCAGAGAGGATTATCACAGAAATATGAAAGCAACTGTTACACC
AATGGTGTGCTCTTGTTTGATTTATACAAATAACACAAATCACACCATCA
ATCAACTGGCCTTGGTAGTATCAAATAAAAAGACACAAAAATAACACTCC
CAGTATTCTACATTCATTCCCTCCACTTCTTCTGACCCACTCATGTCTCT
CTCAGATCCTCCTTCACACAATACCCAAGGTAGCCTCAATTCCCTCACAT
GGGTGGTTTGTACTCTAGGCCTAGGAATATCTCCGATGACCAATCCTTAC
GTAAAGCAAAACTAATCCAGAACTACAAGCACACTTAGCAATAACGATGC
AAGAAGAAAGGTAGGAAGTGTCAGCCACCTTCAATCTACAGTGACCACAG
AGAGTGATTTCCAACTGACAATTCCTCTCTGCATCTGAGAGATGCCATGT
ATGGTGCAATGCATCAGTCAATTAAGTCACTTCATCAGAGCTGCTACATG
CTCCAAAAGGAGTCTACACAATCAGTATGATTATAAAAAATGACATCACC
ACTCTGAATCATAAGCTGAAAGCAAAATA
CATTGCACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGACCTCAA
ACTGAGATCCACCTGCCTCTGACTCCTTAGTGCTGGGATTAAAGGCCTGC
GCCACCATATCTGGATGGGTTTTTTGTTTGTTTGATGTTGAGCTAGAACC
AGATTTGTAAAATAGGTTGGCTTTGAACTGTGTCTAGTTGTGTGCACCTG
CAATCTAGTACTTAGGAGATGGAGGCAGGAGGATCAGAAGTTCAAGGTCA
GCCTGTCTCTGGCATAGCCAGATCTCGAATCAAAAAGAAACAAATCGGCT
GGTCTTTGTGGCCCATGCCCTTAATCCCAGTACTCCGGATGCAGAGGCAT
GGGAATCTCTGTAAGCTCAACGCCAGCTTGGTCTACAAAGAGAGTTCCAG
CTCCCTCAGCGCCACTCTCATATACCTTGTCTCAGACCCATTCTTTTCAG
ATACACAAAATCAACTATATACACATAATGTCTGTTACACATGCTTCCCC
TGTCTACTCCTCTTCTGTCTCCCTTCACTGAATATCTTAATTGTAATACC
CTAATTTTATGCTTCAAATTTTATATCATATCATTATCGCTATAACTGGT
TCCATAAACCTCTCTATTTTTCTTCGTTATTTACCTTTTCTTTACTCTTT
TACCGCCATCTTCTTTGCCTCATTTCTTCCCTTATAATTTCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_p23.b1 MSMg01no054_p23.b1 CHROMAT_FILE:
MSMg01no054_p23.b1 PHD_FILE: MSMg01no054_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:18 2005
         (231 letters)



>mm_chr9_65529342_65529972
          Length = 631

 Score =  424 bits (219), Expect = e-123
 Identities = 228/231 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactgttacaccaatggtgtgctcttgtttgatttatacaaataacacaaatcacaccat 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aactgctacaccaatggtgtgctcttgtttgatttatacaaataacacaaatcacaccat 372

                                                                       
Query: 61  caatcaactggccttggtagtatcaaataaaaagacacaaaaataacactcccagtattc 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 caatcagctggccttggtagtatcaaataaaaagacacaaaaataacactcccagtattc 312

                                                                       
Query: 121 tacattcattccctccacttcttctgacccactcatgtctctctcagatcctccttcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tacattcattccctccacttcttctgacccactcatgtctctctcagatcctccttcaca 252

                                                              
Query: 181 caatacccaaggtagcctcaattccctcacatgggtggtttgtactctagg 231
           |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 251 caatacccaaggcagcctcaattccctcacatgggtggtttgtactctagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)