Query= MSMg01no056_d15.b1 MSMg01no056_d15.b1 CHROMAT_FILE:
MSMg01no056_d15.b1 PHD_FILE: MSMg01no056_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:50 2005
(313 letters)
>mm_chr9_83048363_83049075
Length = 713
Score = 381 bits (197), Expect = e-110
Identities = 261/313 (83%), Gaps = 49/313 (15%)
Strand = Plus / Minus
Query: 5 gaattctttataat----tccatttaattataaaataaataaaaattaaaaggaaaataa 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaattctttataatgaag---atttaattataaaataaataaaaattaaaaggaaaataa 569
Query: 61 aaaaggaatcttaaggattctcagactacctttcacttggagatatatatatatatatat 120
||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 568 aaaaggaatcttaaggattttcagactacctttcacttggag------------------ 527
Query: 121 atatatatatatatatatatatatatatatatatatacctgtaaactctttttgttgcct 180
||||||||||||||||||||||||||||||||||||
Sbjct: 526 ------------------------atatatatatatacctgtaaactctttttgttgcct 491
Query: 181 agatgactctttaccagttagaatagctcctaaccaagttagtctgaacatcatctccaa 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 490 agatgactctttaccagttagaatagctcctaaccaagttagtctgatcatcatctccaa 431
Query: 241 ctactttatgacacttaaagaataatgttttggttttgtttttttaattatcatgctctt 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 430 ctactttatgacacttaaagaataatgttttggttttggttttttaattatcatgctctt 371
Query: 301 aagccagtgttga 313
|||||||||||||
Sbjct: 370 aagccagtgttga 358
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no056_d15.g1 MSMg01no056_d15.g1 CHROMAT_FILE:
MSMg01no056_d15.g1 PHD_FILE: MSMg01no056_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:50 2005
(457 letters)
>mm_chr9_82966099_82966950
Length = 852
Score = 774 bits (400), Expect = 0.0
Identities = 442/458 (96%), Gaps = 7/458 (1%)
Strand = Plus / Plus
Query: 1 tgtaagcagaatagacgaatcctgagctccactcacagtgagaggccaccactcactcag 60
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 201 tgtaagcagaatagacgaatcctgagctccactcacagtgagaggcca----taactcag 256
Query: 61 taaacaaaatagagagccaacaagaaggatattcatgttaagagaaaaaaaaaaagagca 120
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 257 taaacaaaatagagagccaacaagaaggatattcatgttaaaagaaaaaaaaaa-gagca 315
Query: 121 aatcgaagatagctaaacatcaggtgctcacgtcaatggtcagaaatggactgacgaagt 180
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 316 aatcgaagatagctaaacattaggtgctcacgtcaatggtcagaaatagactgacgaagt 375
Query: 181 cacatgaaggcagtcaagagctccactgaagagcaataaaacaaatgtcagtttatgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 376 cacatgaaggcagtcaagagctccactgaagagcaataaaacaaatgtcagttcatgctt 435
Query: 241 gtgagggtgtgtagtaaggagaacactcatctattgctgggggactgaaat-ggtgaacg 299
||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 436 gtgagggtgtggagtaaggagaacactcatctattgctgggggactgaa-taggtgaacg 494
Query: 300 agcattgccggtatcagtgtgtggctcatcaggaagatgggaatcgatctacgtcaagat 359
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 495 agcattgggggtatcagtgtgtggctcatcaggaagatgggaatccatctacgtcaagat 554
Query: 360 actatgttttcttgggcatatacccaatgaatgtttcatcctaccatagagacacatgct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 actatgttttcttgggcatatacccaatgaatgtttcatcctaccatagagacacatgct 614
Query: 420 caactctgctaactgcttctctattttattttatttat 457
||||||||||||||||||||||||||||||||||||||
Sbjct: 615 caactctgctaactgcttctctattttattttatttat 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 852
Length adjustment: 10
Effective length of query: 447
Effective length of database: 842
Effective search space: 376374
Effective search space used: 376374
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
