Query= MSMg01no056_f01.b1 MSMg01no056_f01.b1 CHROMAT_FILE:
MSMg01no056_f01.b1 PHD_FILE: MSMg01no056_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:56 2005
(560 letters)
>mm_chr9_22147792_22148751
Length = 960
Score = 1036 bits (536), Expect = 0.0
Identities = 554/560 (98%)
Strand = Plus / Minus
Query: 1 tctgcttattgcatagcacagttgtaggtatcaaacaccataaactgtgtcgttgtaccc 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 760 tctgcttattgcatagcacagttgtaagtatcaaacaccataaactgtgtcgttgtaacc 701
Query: 61 tgttaagaatatttcttatgtgtttaaatttcttccctttcaaacaaacttgtttttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tgttaagaatatttcttatgtgtttaaatttcttccctttcaaacaaacttgtttttctt 641
Query: 121 atgaaaattatgtacacaaaagctaatctacagcaatagaaagtagccacatttccctgg 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 640 atgaaaattatgtacacaaaagctagtctacagcaatagaaagtagccacatttccctgg 581
Query: 181 agattgacacaggaggatgtaagaggccataagaatgtctgagactgactggtcatgcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 agattgacacaggaggatgtaagaggccataagaatgtctgagactgactggtcatgcta 521
Query: 241 tgtatactcaaagagcggaaacactgtattcaaggggcaggcaagatggcttagcatgaa 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tgtatactcaaagagccgaaacactgtattcaaggggcaggcaagatggcttagcatgaa 461
Query: 301 gcactggctgtaccagccttaggacctgggtttgacgggaacagactccagagtcattct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gcactggctgtaccagccttaggacctgggtttgacgggaacagactccagagtcattct 401
Query: 361 ctgagctctgtaactgtgcacgcgtggacacatgcatgcttgtgtcaagatggtaaagga 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ctgagctctgtaactgtgcatgcgtggacacatgcatgcttgtgtcaagatggtaaagga 341
Query: 421 aaaagtacatgtaaagaaagatcttaaggcacagttgaatgggctttgtcacagccaaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aaaagtacatgtaaagaaagatcttaaggcacagttgaatgggctttgtcacagccaaca 281
Query: 481 gcattctgtcactcgcttatagccagtcccaactgcacacagttcttcccactcctgtcc 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 280 gcattctgtcactcgcttatagtcagtcccaactgcacacagttcttcccactcctgtcc 221
Query: 541 tacattggttttgcttgttg 560
||||||||||||||||||||
Sbjct: 220 tacattggttttgcttgttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no056_f01.g1 MSMg01no056_f01.g1 CHROMAT_FILE:
MSMg01no056_f01.g1 PHD_FILE: MSMg01no056_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:56 2005
(508 letters)
>mm_chr9_22054034_22054941
Length = 908
Score = 961 bits (497), Expect = 0.0
Identities = 503/505 (99%)
Strand = Plus / Plus
Query: 1 tctgatgtctaattaggtgtgccttgtagtagaaagattttccacattccatgcactcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgatgtctaattaggtgtgccttgtagtagaaagattttccacattccatgcactcaa 260
Query: 61 aaggtctctcacctgtgtgagttcgctgatgtagagtaagctgtgaccgacaggagaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 aaggtctctcacctgtgtgagttcgctgatgtagagtaagctgtgaccggcaggagaaag 320
Query: 121 atttttggcattctgtacagtcataaggtttctcatttgtgtgagttctctggtgcagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttttggcattctgtacagtcataaggtttctcatttgtgtgagttctctggtgcagag 380
Query: 181 taaggtgtgataatcggtagaaagctttcccacattcagcacatgcataaggcttcttgc 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 taaggtgtgataatcggtagaaagctttcccacattcagtacatgcataaggcttcttgc 440
Query: 241 tcatgtgaattttctgatgctgagtgaggtatgccttgtgggaaaaggctttcccacatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatgtgaattttctgatgctgagtgaggtatgccttgtgggaaaaggctttcccacatt 500
Query: 301 ctgtacattcatagggcttctcacctgtgtgaactatttgatgtagagtaagttttccct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtacattcatagggcttctcacctgtgtgaactatttgatgtagagtaagttttccct 560
Query: 361 gagagcagaaggctttcccacattccttacatttatagggcctcttacgtatgcgagttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagagcagaaggctttcccacattccttacatttatagggcctcttacgtatgcgagttc 620
Query: 421 ttggatgacttgtgagttttgagttgcaagagaaatcttttctgcactctgtacatccac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttggatgacttgtgagttttgagttgcaagagaaatcttttctgcactctgtacatccac 680
Query: 481 aaagctttgtatctataagagtttt 505
|||||||||||||||||||||||||
Sbjct: 681 aaagctttgtatctataagagtttt 705
Score = 60.7 bits (31), Expect = 2e-13
Identities = 40/43 (93%), Gaps = 2/43 (4%)
Strand = Plus / Plus
Query: 290 tttcccaca-ttctgtacattcatagggcttctcacctgtgtg 331
||||||||| | || ||||||||||||||||||||||||||||
Sbjct: 70 tttcccacactcct-tacattcatagggcttctcacctgtgtg 111
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
