Query= MSMg01no056_l05.b1 MSMg01no056_l05.b1 CHROMAT_FILE:
MSMg01no056_l05.b1 PHD_FILE: MSMg01no056_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:26 2005
(320 letters)
>mm_chr9_86076144_86076865
Length = 722
Score = 540 bits (279), Expect = e-158
Identities = 309/319 (96%), Gaps = 2/319 (0%)
Strand = Plus / Minus
Query: 4 ggaattcctgaggtatctagaagttgggtagagtccaaaatccatgtcaggtgtcttctt 63
||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ggaattcgtgagggaggtagaagttgggtagagtccaaaatccatgtcaggtgtcttctt 463
Query: 64 tgatcactccttaccca-aatattgtattttcttgtgcagatttctgatccatacccagt 122
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tgatcactccttacctacaatattgtattttcttgtgcagatttctgatccatacccagt 403
Query: 123 acctagtttcccaataaacaccacac-catgttaccgatttcttgttggatgtacaatat 181
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 402 ccctagtttcccaataaacaccacactcatgttaccgatttcttgttggatgtacaatat 343
Query: 182 gagggttacagttagaaaaattccacattggatttttaagcttcccatgaaaacccattt 241
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gagggttatagttagaaaaattccacattggatttttaagcttcccatgaaaacccattt 283
Query: 242 cctccctggtgaagtagctagaaagccatgtctcataagcccatggctatcctgggctct 301
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 282 cctccctggtgaagtagctagaaagccatgtctcagaagcccatggctatcctgggctct 223
Query: 302 gtagttctgactcctcagc 320
|||||||||||||||||||
Sbjct: 222 gtagttctgactcctcagc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 722
Length adjustment: 9
Effective length of query: 311
Effective length of database: 713
Effective search space: 221743
Effective search space used: 221743
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no056_l05.g1 MSMg01no056_l05.g1 CHROMAT_FILE:
MSMg01no056_l05.g1 PHD_FILE: MSMg01no056_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:26 2005
(560 letters)
>mm_chr9_85912449_85913408
Length = 960
Score = 1060 bits (548), Expect = 0.0
Identities = 557/560 (99%)
Strand = Plus / Plus
Query: 1 aaagtatggcccactcactgaagcaccgggcacagttacagcatggcgctcaggaaattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagtatggcccactcactgaagcaccgggcacagttacagcatggcgctcaggaaattg 260
Query: 61 aagttttcattatcatcaaccccctgtcccttccaatctcccagaacctcagcactcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagttttcattatcatcaaccccctgtcccttccaatctcccagaacctcagcactcttg 320
Query: 121 ttttgaaaatagagccgaggaaaagattggacaattaaggtcatttccaactggaacctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttgaaaatagagccgaggaaaagattggacaattaaggtcatttccaactggaacctt 380
Query: 181 tgatacacatcacttgctttgtacttaactgcgacatctatgagaagtaggatgggtctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatacacatcacttgctttgtacttaactgcgacatctatgagaagtaggatgggtctg 440
Query: 241 tgcttctgagttcattctccccatccagggcttcagtccttaaaagaattccaatagaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcttctgagttcattctccccatccagggcttcagtccttaaaagaattccaatagaca 500
Query: 301 aggcaggcatcacattgcagtgtgtaggacatctttgctcccaataggttttatctaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggcaggcatcacattgcagtgtgtaggacatctttgctcccaataggttttatctaaca 560
Query: 361 aaattcctctgtattaaaagaagactcctctacagggagacctctgcattcagatcctca 420
|| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 561 aagttcctctgtattaaaagaagactcctcaacagggagatctctgcattcagatcctca 620
Query: 421 aaggtaccgtttactagaagtttcacgctgtgctctgttggctggcttcttcagggtgac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaggtaccgtttactagaagtttcacgctgtgctctgttggctggcttcttcagggtgac 680
Query: 481 actgcatgtggcctcagagagccctcttctcccaggacaggcttctggaactaagtctgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actgcatgtggcctcagagagccctcttctcccaggacaggcttctggaactaagtctgc 740
Query: 541 cattttagagagcgtggtaa 560
||||||||||||||||||||
Sbjct: 741 cattttagagagcgtggtaa 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
