Query= MSMg01no057_a08.b1 MSMg01no057_a08.b1 CHROMAT_FILE:
MSMg01no057_a08.b1 PHD_FILE: MSMg01no057_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:50 2005
(495 letters)
>mm_chr9_28475156_28476049
Length = 894
Score = 926 bits (479), Expect = 0.0
Identities = 491/495 (99%), Gaps = 1/495 (0%)
Strand = Plus / Plus
Query: 1 gatgtttgggggttgaatcctctctcaaaagcttttatttcctccccattctcctgccaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatgtttgggggttgaatcctctctcaaaagcttttatttcctccccattctcctgccag 260
Query: 61 atctctcagaatattctcaaccaatacctcagcacaaatattagctctagcagagtcatt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 -tctctcagaatattctcaaccaatacctcagcacaaatattagctctagcagagtcatt 319
Query: 121 ggcagtgttaaatttctgactgtcttcaccataaagggttttccctttcataatttaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggcagtgttaaatttctgactgtcttcaccataaagggttttccctttcataatttaggg 379
Query: 181 ccttgttgatgctttagagttagctctatttgtaactcaaggaataacagagaagttaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccttgttgatgctttagagttagctctatttgtaactcaaggaataacagagaagttaaa 439
Query: 241 gcctcccaagagaacagcttttgcaatttagaatgcattgggagttgatttaatgatatt 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 440 gcctcccaagagaacagcttttgcaatttagaatgcattgcgagttgatttaatgatatt 499
Query: 301 tcatttgggctctcctcttcttttgctctgaaaagtcatttattactactctctgacttc 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 500 tcatttgggctctcctcttcttttgctctgaaaagtcatttattattactctctgacttc 559
Query: 361 tctaaagcaagatcttctccctatctcttgggctggcagtattaacatattctgatgcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tctaaagcaagatcttctccctatctcttgggctggcagtattaacatattctgatgcat 619
Query: 421 tataccaagagatggagtaaggtttgagagattaagagtcttcttaatggaaatttgctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tataccaagagatggagtaaggtttgagagattaagagtcttcttaatggaaatttgctt 679
Query: 481 aactctcaattaaca 495
|||||||||||||||
Sbjct: 680 aactctcaattaaca 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 894
Length adjustment: 10
Effective length of query: 485
Effective length of database: 884
Effective search space: 428740
Effective search space used: 428740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_a08.g1 MSMg01no057_a08.g1 CHROMAT_FILE:
MSMg01no057_a08.g1 PHD_FILE: MSMg01no057_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:50 2005
(442 letters)
>mm_chr9_28609481_28610322
Length = 842
Score = 719 bits (372), Expect = 0.0
Identities = 393/402 (97%), Gaps = 4/402 (0%)
Strand = Plus / Minus
Query: 41 tacaaacagcaaaaaaaaaaaaaatagacacactggatttctaactgaagaaggcttcaa 100
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 tacaaacagc----aaaacaaaaatagacacactggatttctaactgaagaaggcttcaa 787
Query: 101 aatggccagcatgtatatcaaaatatgcctagcagtgtttctcaccaggaaaatgtaagt 160
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 786 aatggccagcatgtatatcaaaatatgcctagcagtgtttctcaccaggaaaatataagt 727
Query: 161 caaaatccaaagcaggtacacaccaggataattataataaaaggcagacaacataagctt 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 caaaatccaaagcaggtacacaccaggataattataataaaaggcagacaacataagctt 667
Query: 221 tggcaatgacatagaaaatattggtggtgtgactttgaagttggaccagtagcttctcac 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tggcaatgacatagaaaatattggtggtgtgactttgaagttggaccagtagcttctcac 607
Query: 281 aaacttagttttcatatgacccaactgtcacagctcagatgaataaacccaagggaaaca 340
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 606 aaacttagttttcatatgacccaactgtcacagctcagatgtataaacccaagggaaaca 547
Query: 341 tgaacttcaacaaaatatattctgatttctacaataatatttccaacaatcagaatgata 400
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tggacttcaacaaaatatattctgatttctacaataatatttccaacaatcagaatgata 487
Query: 401 caataaaccaattgtctattaagagatagccatgcggtaata 442
|||||||||| |||||||||||||||||||||||||||||||
Sbjct: 486 caataaaccatttgtctattaagagatagccatgcggtaata 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
