BAC Information

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BAC

Clone NameMSMg01-057D14
Chromosome9 (Build37)
Map Location 103,542,328 - 103,542,555
singlet/doubletsinglet
Overlap geneTmem108
Upstream geneAmotl2, EG434510, Ryk, Slco2a1, Rab6b, Srprb, Trf, 1300017J02Rik, Topbp1, Cdv3, Bfsp2, 4932413F04Rik
Downstream geneEG384978, Nphp3, Ube1dc1, Acad11, Ccrl1, Hmgb1-rs16, Acpp, LOC100040921, Cpne4
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057D14.T7 (MSMg01no057_d14.b1)MSMg01-057D14.TJ (MSMg01no057_d14.g1)
ACCAG284434AG284435
length762784
length of high quality
(start - end)
228 (127 - 354)65 (77 - 141)
definitionCHROMAT_FILE: MSMg01no057_d14.b1 PHD_FILE: MSMg01no057_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:06 2005CHROMAT_FILE: MSMg01no057_d14.g1 PHD_FILE: MSMg01no057_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTTNNNNNNNNNNNNCCTTTTTTCTTCCTCTTTTNCNCCCAAAAAAA
GGAAATTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCG
CGGAATTCTCTTCCATTTCCCCAGAGGAACAGCTTGCTGCTGTGCCTACT
ACAGTAATAAATAAATGCTATCACTGTTAACTACATCTTCTCATTTATGG
GCTCCATCTGTCTGTCAGTGTGTCTTTCTGTCTATCAGTCATTGACCTCC
ATTCCCAACAAATACGGAGACCCAAGCAGGCTCTCTGCTTCTACGTGCTT
ACCCTTGACAGTAGGGAAACCATCCTCTACTTTATCTTCTAAGTCGTCTT
CCAGAGAAGAGCAAGTGAAAGGAGGCATGAATAGAGGAGTGGGCACCTGA
CCCGTTGTGTATATGCGTGGGTGGCATCCCAGGCACTCCCATTGTATCAT
TACGTTTGTATACACTCCTGCTTGCACCAAATAATAAGGGTACCAAGGCA
GAGTTGATAGTCTGTGTTCACTAACTCATTCTTCTCTCCCCTGGATAGGC
GAGGTACATGGAATTCTGTTGGCACCTGGAAGTCAGTCAACTTACTCTTG
CAAACAAATTTTGAGTCCCTGGCAGGCTAACACTCCAGCTCACTTCCAAA
TGGCATTAAGCTTGGCTAGGAATAAGTAACTCTTTATTGTAACACCTGCT
GAGAACTTAATACTTTTGTTTAAGCAAACTAATGTCGCCTACTCTGACTT
AAAAGATTGCCN
TCGATGATAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCTTAAGGAAAAACACACACACT
CTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGCGCGCGTCCTC
TCACTACACCCTCTCTCTACCTCCTCCTCTCTCTCTCTCTCCTCTCTTCT
CTTCTCCCACTCTTCACTACTCTTTCTTCTTCTTCTCCACTCTCTCTTCT
CCTTTCCACTTCTCTTCTCTCACTCATCTCTACTGTCACCTCCCCTAACT
TCACCTTATAATTAAACCCAACAAAACTATACTCTCTATTTCGCTCTTCC
GCTCATCTCTCTCATCCGTTACTTCTCCTCTCCTCCTCTCCTCCCTCCTT
TATCATATACACATTTAAAAATTTACAAATATCTTCACCCTCATCATCCT
TTATTCCCTTTTATACCCCTCACTTTTAATCCGTCTCATCTCTTCTTGAC
TCGCTCTTACTCATCTTTCTCTCGTTCATCATCTCTTCTCCAGAGATGCT
CTACTATTACTCTCTATTCGTTCTCCATCATTCATCTTCATCTTACTCTA
CTCCCATCACCTCACTATTCCTCCATTACCCTACTTCATCAACTCTATTA
TCAAATAGTTCATCCACTAATTCATACTATTTCATCCTACTTCATACTAC
TAATCAATATACATCATTTCTAAATCATACTCATTCAACATCTACTCATT
TTCTCGCCTTCATTCATCCTATCTCATTACTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_d14.b1 MSMg01no057_d14.b1 CHROMAT_FILE:
MSMg01no057_d14.b1 PHD_FILE: MSMg01no057_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:06 2005
         (228 letters)



>mm_chr9_103542128_103542755
          Length = 628

 Score =  441 bits (228), Expect = e-128
 Identities = 228/228 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaacagcttgctgctgtgcctactacagtaataaataaatgctatcactgttaactacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaacagcttgctgctgtgcctactacagtaataaataaatgctatcactgttaactacat 260

                                                                       
Query: 61  cttctcatttatgggctccatctgtctgtcagtgtgtctttctgtctatcagtcattgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttctcatttatgggctccatctgtctgtcagtgtgtctttctgtctatcagtcattgac 320

                                                                       
Query: 121 ctccattcccaacaaatacggagacccaagcaggctctctgcttctacgtgcttaccctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccattcccaacaaatacggagacccaagcaggctctctgcttctacgtgcttaccctt 380

                                                           
Query: 181 gacagtagggaaaccatcctctactttatcttctaagtcgtcttccag 228
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacagtagggaaaccatcctctactttatcttctaagtcgtcttccag 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)