BAC Information

Click to search

BAC

Clone NameMSMg01-059P07
Chromosome9 (Build37)
Map Location 95,349,454 - 95,349,999
singlet/doubletsinglet
Overlap genenone
Upstream gene1190002N15Rik, EG667601, Slc9a9, Chst2, LOC667088
Downstream gene2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1, Gk5, Tfdp2, 1110029I05Rik, Atp1b3, BC043934
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059P07.T7 (MSMg01no059_p07.b1)MSMg01-059P07.TJ (MSMg01no059_p07.g1)
ACCAG286513AG286514
length691705
length of high quality
(start - end)
512 (65 - 576)243 (70 - 312)
definitionCHROMAT_FILE: MSMg01no059_p07.b1 PHD_FILE: MSMg01no059_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:35 2005CHROMAT_FILE: MSMg01no059_p07.g1 PHD_FILE: MSMg01no059_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCTAAATTTGCGGCGCTATACGACTCCTATCCAAGAGGAGCCGCGGAA
TTCATGAACTACACAGGACTTCTGATGATACCAAGGAGTCACTAGTTACT
TTTTGTGGTATATAATGGCATCATGGTTTCTTTTTTCCTGTACCTTGTGA
AGAAAGCAGCACACTGACTGTGTATAATTAAAGTCCTATGCCTGAGAATC
ACACAGACTAAAGCAAATTAGAGAGGTTAGGGTCCACTGTACTGTCCTTC
CTCCTTTTACATGTTTGAATTTTTCCAGAATTTAATGCAAACAGACACTG
AGTCCAAGGCCCCTCTCCTGATATGCTGGATCAGAGAGCTGAGTTTCTGA
GAGCTGTGTGATTCTTATGGAGTTGGTCTGTGGGTGGGTGTCTGGGAAGT
CTATTTGACTCAAAAAGAGTTGGAGCACAAGGGCAAGCAATGTTTTCCTG
GGCTCGGCTCACGGGGGAACCTATTTTGCCTTGCTCAGACCCAGGTCCTC
CTTGAGATACCTGTGGGCACCATTCCTACGGAACACCATGCTCTGACCCA
GTTTCAGTGCACACCTCCAGAAGGGATCCAGGTCTCCTGGGAGCTGCCAG
GGTTCTTTCCTCATGCCTGACATCATTCTCATGCGGTTGCTTGATCTGTG
AGGACCATGACGTCTGCTGAGTGTGCTGGGAGACTCATACA
TCGATGATAGGGGAGGCTGGCGGCGCCTGTTCAACACAGGAGGTGACCTA
TAGAATGTCAGCGGAATTCAGCCAGATTTTATACACACACACACACACAC
ACACACACACACACACACACACACACACACACAGAGGTTTATTGGGAAGC
TGCTGCTCTTGGGTGGATTTACTGGCCTCAAGGACCAAGGTCAGAGAAGC
CACAATGGGAAGGGAAAAGGAAGGGGGAAGAGAGAAAGCAAGAAGGAACA
CACACACAAACACACACACACACACACACACACACACACACACACACACA
CACACAGAGAGATTTTTTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAG
GATAGAACAGCACCCCCCTCGCCGCCCGTGTATTTCACCCTTTCTTTAAC
TTATTTTCCCATCCCCTTATTTCATTTCTTTTCCTATACCTTTATTCTTT
TCCCTTTTCCCCTGTCTCCTCTTCTCTCACTTCTCTCACCTCCATTTACG
TTCTTGATTTATATGCCATCTCTTTTCTTCTTACGATCATGATATTCTTC
CAGCACCTCCCCCTATTTTTTTTGCGCTCCCCTCTTTTACACCCACCTCC
TAAACTACCCCCCCACCCTTTCATCCTTTTTTTTTTCCTTTAATACCTTA
CCCATATCAATTTTTTTTTAACCTTTATCCCATTTTACCTTCTCCTTCCT
CTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_p07.b1 MSMg01no059_p07.b1 CHROMAT_FILE:
MSMg01no059_p07.b1 PHD_FILE: MSMg01no059_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:35 2005
         (512 letters)



>mm_chr9_95349276_95350187
          Length = 912

 Score =  828 bits (428), Expect = 0.0
 Identities = 501/546 (91%), Gaps = 34/546 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggacttctgatgataccaaggagtcactagttactttttgtggtatataatggcatcat 60
           |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 179 aggacttccgatgataccaaggagtcactagtaactttttgtggtatataatggcatcat 238

                                                                       
Query: 61  ggtttc--------------ttttttcctgtaccttgtgaagaaagcagcacactgactg 106
           ||||||              ||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ggtttcttttttttttttttttttttcctgtaccttgtgaagaaagcagcacactgactg 298

                                                                       
Query: 107 tgtataattaaagtcctatgcctgagaatcacacagactaaagcaaattagagaggttag 166
           ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 299 tgtataattaaagtcctatgcctgagaattacacagattaaagcaaattagagaggttag 358

                                                                       
Query: 167 ggtccactgtactgtccttcctccttttacatgtttgaatttttccagaatttaatgcaa 226
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ggtccactgtactgtcctttctccttttacatgtttgaatttttccagaatttaatgcaa 418

                                                                       
Query: 227 aca--------gacactgagtccaaggcccctctcctgatatgctggatcagagagctga 278
           |||        |||||||||||| |||||||||||| ||| ||||||| |||||||||||
Sbjct: 419 acagacactgggacactgagtcccaggcccctctccagatctgctggaccagagagctga 478

                                                                       
Query: 279 gtttctgagagctgtgtgattcttatggagttggtctgtgggtgggtgtctgggaagtct 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gtttctgagagctgtgtgattcttatggagttggtctgtgggtgggtgtctgggaagtct 538

                                                                       
Query: 339 atttgactcaaaaagagttggagcacaagggcaagcaatgttttcctgggctcggctcac 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 atttgactcaaaaagagttggagcacaagggcaagcaatgttttcctgggctcggctcac 598

                                                                       
Query: 399 gggggaacctattttgccttgctcagacccaggtcctccttgagatacctgtgggcacc- 457
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 599 gggggaacctactttgccttgctcagacccaggtcctccttgagatacctgtgggcacct 658

                                                                       
Query: 458 -----------attcctacggaacaccatgctctgacccagtttcagtgcacacctccag 506
                      |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gtgagctttccattcctacagaacaccatgctctgacccagtttcagtgcacacctccag 718

                 
Query: 507 aaggga 512
           ||||||
Sbjct: 719 aaggga 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)