BAC Information

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BAC

Clone NameMSMg01-060I22
Chromosome9 (Build37)
Map Location 29,124,203 - 29,124,344
singlet/doubletsinglet
Overlap geneHnt
Upstream geneOpcml, LOC625222
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060I22.T7 (MSMg01no060_i22.b1)MSMg01-060I22.TJ (MSMg01no060_i22.g1)
ACCAG286973AG286974
length804755
length of high quality
(start - end)
---143 (106 - 248)
definitionCHROMAT_FILE: MSMg01no060_i22.b1 PHD_FILE: MSMg01no060_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:18 2005CHROMAT_FILE: MSMg01no060_i22.g1 PHD_FILE: MSMg01no060_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAACTATCTAAGAGCGAGANAGAGAAAACACTTCAAAAAGGGGGNNNNNN
NNNCNTTTTACAGCACCAGCGGGGGGGGGGGGGGCGGGGGGGGGNGGNNN
GNNNNCCTTCTTTCACCAAAAACAGAGGACGCGACCAAAACAAAAAGGTT
ATTCCGAACGGGGGGGGCGCACCGGAGCGGGATGGCGCCCTTGTCGCTAC
CTGGTCATGTAACTTGCGCGGCCTCGCCGCTCCGCGTGGCTCCCGTTGCA
ATTATGCCCGCCCCGCCCCTGTCCCCCCCCTTCTTCCTGTCCGCTGCGAG
TGGGCGTGCACCGGCGCCCGTGTTTGTTTGTGCCGCATTAATGCCGAAAA
GAAAAACGCGCGAATTATTTTTTTCTATGGCTCAAACGAACGGAGAAAGA
GCACGCCCCAATACATCATCCAAAAGACACCACCCGTACCCCCTAGCACC
ACTACACTCCACTATCGCTATAATGACCGCCACCTCCTCAAGACAACATT
TTAGAGCCCTGCCCCCACCTTCCCTATACTCACCAGTCTACAACCACCCG
GCTGTGTGGTAAGCCGCCCGTATGTTTCCTTATGCCGCGCCAGGCATTGT
CCACTATGCGCGTCTCACGCCGGAAAGAGAGCCCCAAATAGGCGATCTGG
AGACCATAGAACGCCGAGAAGGGTCATATCGCGAAGTTCCTATATCATGG
TCTGCAGACGTGGAGACAATATACTGGAGCGTACGGCGCGCGCAATGCCC
CGTTCAGCCCCGATGTGGATGCCACACCCCCAAACACCTTATGCGCCCCG
TTGG
ATGAAAAGAATAGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTACGCCAAGAAGGATATAAGATGTCT
GGTTCCCAGCTCTTATATACTCTGCCACCTCCATGTCTGGTGTTGTTTCT
ACTTTATTTATTTCTAGGCAATACTTCCACGTGGAGGTTCCTTCAGTTTA
TTTACCATAAACCATTTTCCCCCACTGCATTTCAGTTCTACAAATGAATT
GCAGACCATATGACTTACATATGGAAAATGTTCACCCCTCATGTGTACAT
GTGCATTTTTCGTATTAGCATGCCTCTGATATCCTATTGCAAAAAATAAT
TATTGTCCCATTCTCCACTGGGGTGAAGAAAGGGGACTTAACAAATTATA
TAGGGCCTGCTTTGGTCTTTCCCCTCTATTTCATTATTTAAACGGGTGTT
CGCTCATTCAAAGAACCGAGTTTCGATTCTCCACTGAAAGAGGAATAGTG
CGTGTGGGGCCGCACATGATAAGAAACAGATGGTGGCGTCAAAAAAAAAA
TAAAGGGAATACCTTTAACCACTACATTCCCACCGAGGGACAACACAAAA
AAGGGGGGGAAGAAAAAAATACGCCACCCAAAAAAAAAAAAGGGGGGGGA
TAAAAAAAATGCTGTTTGCCCACCACAAGTGCCTCCGCCCCCACCCANNT
CATGTGGGGAAACAAAAAAAACACAACCACCAAGTTTTTACAACAATCGG
GGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_i22.g1 MSMg01no060_i22.g1 CHROMAT_FILE:
MSMg01no060_i22.g1 PHD_FILE: MSMg01no060_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:19 2005
         (143 letters)



>mm_chr9_29124003_29124544
          Length = 542

 Score =  223 bits (115), Expect = 5e-63
 Identities = 136/143 (95%), Gaps = 1/143 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagctcttatatactctgccacctccatgtctggtgttgtttctactttatttatttct 60
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ccagctcttagagactctgccacctccatgtctggtgttgtttctactttatttatttct 283

                                                                       
Query: 61  aggcaatacttccacgtggaggttccttcagtttatttaccataaaccattttcccccac 120
           |||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 282 aggctatacttcct-gtggaggttccttcagtttatttaccataaaccattttcccccag 224

                                  
Query: 121 tgcatttcagttctacaaatgaa 143
           || ||||||||||||||||||||
Sbjct: 223 tggatttcagttctacaaatgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 542
Length adjustment: 8
Effective length of query: 135
Effective length of database: 534
Effective search space:    72090
Effective search space used:    72090
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)