Query= MSMg01no061_d19.b1 MSMg01no061_d19.b1 CHROMAT_FILE:
MSMg01no061_d19.b1 PHD_FILE: MSMg01no061_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:09 2005
(274 letters)
>mm_chr9_28115337_28116010
Length = 674
Score = 476 bits (246), Expect = e-139
Identities = 267/274 (97%), Gaps = 1/274 (0%)
Strand = Plus / Plus
Query: 1 ggactggtgaggaggagctgcacaatgcactggctgactctaaacacaatcagctctgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggactggtgaggaggagctgcacaatgcactggctgactctaaacacaatcagctctgcc 260
Query: 61 tacctccctcttcactacctggtcatcaggcttcaaagaaagccatgctttctgcatggt 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacctccctcttcactacccggtcatcaggcttcaaagaaagccatgctttctgcatggt 320
Query: 121 ccaagggcatgtctgaatggagctgggcattctgggtgttggggttgaacagagtattcc 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaagggcatatctgaatggagctgggcattctgggtgttggggttgaacagagtattcc 380
Query: 181 tagttatagtttctttgtcttgatttccaaggaaatgagagaaggaaagagaggggggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 tagttatagtttctttgtcttgatttccaaggaaatgagagaaggaaagagagtggggag 440
Query: 241 ggagagactcacagagagtgggacagaga-gggg 273
|||||||| || ||||||||||| ||||| ||||
Sbjct: 441 ggagagacacagagagagtgggagagagatgggg 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space: 176225
Effective search space used: 176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no061_d19.g1 MSMg01no061_d19.g1 CHROMAT_FILE:
MSMg01no061_d19.g1 PHD_FILE: MSMg01no061_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:09 2005
(619 letters)
>mm_chr9_28208348_28209366
Length = 1019
Score = 1065 bits (551), Expect = 0.0
Identities = 602/619 (97%)
Strand = Plus / Minus
Query: 1 tcttatctggaagtgagggtgaggccatttttgcactaactcagggaaggtggcttgaga 60
||||||| ||||||||||||||||| ||| ||||| ||||||||| ||||||||||||||
Sbjct: 819 tcttatcaggaagtgagggtgaggctattgttgcattaactcaggaaaggtggcttgaga 760
Query: 61 taggaagagttattggaaatgtgaagaaagaagaaacatgtgcaaagttccagatgggac 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 759 taggaagagttattggaaatgtgaagaaagaagaaacatgtgcaaatttccagatgggac 700
Query: 121 gaggatgactgaggctggtgaaaaacagaagcagagatgatctgacgtggagataagagt 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 699 gaggatgactgaggctggtgaaaaacagaagcagagatgagctgacgtggagataagagt 640
Query: 181 cctcaataacacacactgaggcttgtgcctgtgaagtaacaacctcagaaagtgactgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 cctcaataacacacactgaggcttgtgcctgtgaagtaacaacctcagaaagtgactgtt 580
Query: 241 ttccaggctaccttcctccaagtaaaggcttctggggactgaaagaccagaggcctggct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ttccaggctaccttcctccaagtaaaggcttctggggactgaaagaccagaggcctggct 520
Query: 301 ctatactctcctgtcaccacagctcctagcttagtctctgtgacagattaaatctgaatc 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 519 ctatactctcctgtcaccacagctcctagcttagtctctgtgacagaataaatctgaatc 460
Query: 361 cacgaacttttgagtcaaggaagacactgtaaagatcttttctgtatgggcaaaggaaac 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 459 cacgaacttttgagtcaaggaagacactgtaaagatcttatctgtatgggcaaaggaaac 400
Query: 421 agagttgaagattacaatgaacacaattaaacaatttgtgccaggaatattctgggaaaa 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 399 agagttgaagattacaatgaacacgattaaacaatttgtgccaggaatattctgggaaaa 340
Query: 481 gctttggcccctggtatgatagcataggcttctaattacaccttcttgcatgtatgaatt 540
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 339 gctttggcccctggtatgataggataggcttctaattacaccttcttggatgtatgaatt 280
Query: 541 tatatgtagaaactatttaacatatggaatactggctttgatgctgggttttttgttcaa 600
||||||||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||
Sbjct: 279 tatatgtagaaacaatttatcatatggaatactggctttgaagctgggttttctgttcaa 220
Query: 601 atatggagttctcatgtct 619
||||||| |||||||||||
Sbjct: 219 atatggaattctcatgtct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
