BAC Information

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BAC

Clone NameMSMg01-061E12
Chromosome9 (Build37)
Map Location 112,784,424 - 112,785,031
singlet/doubletsinglet
Overlap genenone
Upstream gene4930545L08Rik, Arpp21, LOC100039341, LOC620760, LOC100043800
Downstream geneEG622110, LOC100039391, LOC100043801, LOC100043802, LOC636680, Pdcd6ip, Clasp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061E12.T7 (MSMg01no061_e12.b1)MSMg01-061E12.TJ (MSMg01no061_e12.g1)
ACCAG287527AG287528
length714711
length of high quality
(start - end)
560 (41 - 600)609 (70 - 678)
definitionCHROMAT_FILE: MSMg01no061_e12.b1 PHD_FILE: MSMg01no061_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:12 2005CHROMAT_FILE: MSMg01no061_e12.g1 PHD_FILE: MSMg01no061_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAAGATCCGCGGAATT
CAAGGTTTACACCTAAACATAATAAAATCAACATACAGCAAACCAACAGC
CAACATCAAATTAAATGGAAAGAAACTTGAAGCAATCCCACCAAAATCAG
TGACAAGACAAGGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTTGCCCTCCCCCTCCCCCTCTCCCTCTCTCTCTCCTTCA
TATAGTACTTTAAATTCTAGCTAGAAAAATTATACAACAAAAGGAGGTCA
AAGGGATATGAATTATAAAGGAAGAAGTCAATATAGCATTATTTGCAGAT
GATATGATAGTGTATATAAGCAACTCCAAAAATTCTATCACAGAGCTCCT
ATACCTGATAAACAACTTCACCAAAGTAGCTAGATATAAAATTAACTCAA
ACAAATCAGTAGCCTTTCTTTATACCAAGAATAAGTTAGCTAAGAAAGAA
ATTAGGGAAACAACACTCTCCACAGTAGTCACAAGTATTATACAATATCT
TGTCATAATTCTACCCAAGTAAGTGAAAGATCTGTATGACAAGAACTTCA
AGTCTCTGAAGAAAGAAATCAAAGTAGTCTTCAGAAGATGATTAGATCTC
ACATGCTCATGGATTAACATAGTAAAAATGGCCATCTTACCAAAAGCAAT
CTACACATTCAATG
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGACCAGCCAGAGATACATAATGAGACCCT
GTCTCAAAACAAAAGAAGCCAAATATTTTGAAAAGAAACCACTTTAATAC
TTAAAGTTCCAATATCTGTGACATCATTTTCCCCAATCCCAGAATCCCAG
CTCACCATTTAACATGCACAAACATAGACAACACAACCTTGTGACCAAAT
ACCTGGACTGTAGAGAAATAGTTGATTCTTAATTTTGTAGCTATCAATGT
GTCTATCTGCTCATTACTCACTGGGGTATCAGTTTTATATGTAACACAGT
GGGTGACCGGGACAGTGCTCTGAACAGTGGCAGAATCCATAGGAACACAG
CTGTGAGCTTTTCTGTTATCAGGATAGGTGCACAGTAGTGGGGACCTAAC
ACTCTCAGTCACAGACAGACAATGGCGTGGGAGAACTTGAACATTTTCTA
AATGAAAAACAAGCAGAATTCATTCTAACACCCTGCGTCCTAGCTACCAT
CCACTGCTTCTGCATCACTGGAGTTGGGCAGGCATATTCATCTCTCTAGG
AAAGAGACTGGGAGACAGAAAGGCCCTCTATGCTCATGCTCCCTTGACCA
CTCACACTGCTTTATACATCCCTGTGGCTGAAATGCATGTAATGTGTGAA
TGTGTGTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_e12.g1 MSMg01no061_e12.g1 CHROMAT_FILE:
MSMg01no061_e12.g1 PHD_FILE: MSMg01no061_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:12 2005
         (609 letters)



>mm_chr9_112784224_112785231
          Length = 1008

 Score = 1100 bits (569), Expect = 0.0
 Identities = 599/609 (98%), Gaps = 1/609 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaccagccagagatacataatgagaccctgtctcaaaacaaaagaagccaaatatttt 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaccagccagagctacataatgagaccctgtctcaaaacaaaagaagccaaatatttt 260

                                                                       
Query: 61  gaaaagaaaccactttaatacttaaagttccaatatctgtgacatcattttccccaatcc 120
           |||||| ||| |||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 261 gaaaagcaactactttaatacttaaagttgcaatatctgtgacatcattt-ccccaatcc 319

                                                                       
Query: 121 cagaatcccagctcaccatttaacatgcacaaacatagacaacacaaccttgtgaccaaa 180
           ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 320 cagaatcccagctcaccgtttaacatgcacaaacacagacaacacaaccttgtgaccaaa 379

                                                                       
Query: 181 tacctggactgtagagaaatagttgattcttaattttgtagctatcaatgtgtctatctg 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 380 tacctggactgtagagaaatagttgattcctaattttgtagctatcaatgtgtctttctg 439

                                                                       
Query: 241 ctcattactcactggggtatcagttttatatgtaacacagtgggtgaccgggacagtgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctcattactcactggggtatcagttttatatgtaacacagtgggtgaccgggacagtgct 499

                                                                       
Query: 301 ctgaacagtggcagaatccataggaacacagctgtgagcttttctgttatcaggataggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctgaacagtggcagaatccataggaacacagctgtgagcttttctgttatcaggataggt 559

                                                                       
Query: 361 gcacagtagtggggacctaacactctcagtcacagacagacaatggcgtgggagaacttg 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 560 gcacagtagtggggacctaacactctcagtcacagacagacaatggtgtgggagaacttg 619

                                                                       
Query: 421 aacattttctaaatgaaaaacaagcagaattcattctaacaccctgcgtcctagctacca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aacattttctaaatgaaaaacaagcagaattcattctaacaccctgcgtcctagctacca 679

                                                                       
Query: 481 tccactgcttctgcatcactggagttgggcaggcatattcatctctctaggaaagagact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tccactgcttctgcatcactggagttgggcaggcatattcatctctctaggaaagagact 739

                                                                       
Query: 541 gggagacagaaaggccctctatgctcatgctcccttgaccactcacactgctttatacat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gggagacagaaaggccctctatgctcatgctcccttgaccactcacactgctttatacat 799

                    
Query: 601 ccctgtggc 609
           |||||||||
Sbjct: 800 ccctgtggc 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1008
Length adjustment: 10
Effective length of query: 599
Effective length of database: 998
Effective search space:   597802
Effective search space used:   597802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)