Query= MSMg01no061_e14.b1 MSMg01no061_e14.b1 CHROMAT_FILE:
MSMg01no061_e14.b1 PHD_FILE: MSMg01no061_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:13 2005
(244 letters)
>mm_chr9_107644803_107645446
Length = 644
Score = 472 bits (244), Expect = e-138
Identities = 244/244 (100%)
Strand = Plus / Plus
Query: 1 ttctgctgctcggtctctgtatttcatctaatatagaaaacaacaaaaataaggtaggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgctgctcggtctctgtatttcatctaatatagaaaacaacaaaaataaggtaggag 260
Query: 61 tatcctcatttcaactttcaatagtcttaaacatgcagatgttaacctgcagtagtacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatcctcatttcaactttcaatagtcttaaacatgcagatgttaacctgcagtagtacct 320
Query: 121 tttaacttggagcctgactatttagacttcaaaaccaaatccctttgtttcttttaccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaacttggagcctgactatttagacttcaaaaccaaatccctttgtttcttttaccac 380
Query: 181 ttttggtctcattgcttggtactgtcctaaagatgaggaggccagaactggccatcccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttggtctcattgcttggtactgtcctaaagatgaggaggccagaactggccatcccca 440
Query: 241 ggta 244
||||
Sbjct: 441 ggta 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no061_e14.g1 MSMg01no061_e14.g1 CHROMAT_FILE:
MSMg01no061_e14.g1 PHD_FILE: MSMg01no061_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:13 2005
(613 letters)
>mm_chr9_107794510_107795522
Length = 1013
Score = 1058 bits (547), Expect = 0.0
Identities = 574/591 (97%), Gaps = 14/591 (2%)
Strand = Plus / Minus
Query: 23 tcagagttcaaggtcagcctggtctacagagtcagttccaggacagccagggctacacag 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 tcagagttcaaggtcagcctggtctacagagtcagttccaggacagccagggctacacag 954
Query: 83 agaaaccagatctcaaaaaacaaacaacaacaacaacaacaacaacaacaacaacaacaa 142
|||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 953 agaaaccagatctcaaaaaacaaaca-----------aacaacaacaacaacaacaac-- 907
Query: 143 aaaaccccaataataatgaggaagaagaggaagaggagcaggagatctaggaatatggtt 202
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 -aaaccccaataataatgaggaagaagaggaagaggagcaggagatctaggaatatggtt 848
Query: 203 caggtggtagagtgctcgcttagtatgctcgaaggttctactcaaactggtggtgcatgc 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 caggtggtagagtgctcgcttagtatgctcgaaggttctactcaaactggtggtgcatgc 788
Query: 263 ctgcgatgagagcagagggatcaggagctcaagggcatctttagctagaaaagtgagtgt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ctgcgatgagagcagagggatcaggagctcaagggcatctttagctagaaaagtgagtgt 728
Query: 323 gatgtaagcttggtctgaacgacatgctgtctttttaaaaagcacaaaaactaggcatta 382
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 727 gatgtaagcttggtctgaatgagatgctgtctttttaaaaagcacaaaaactaggcatta 668
Query: 383 tgacttaggcttaaaatctcaaacttggtaggccaatgcaggaaggtgagctacagtgag 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tgacttaggcttaaaatctcaaacttggtaggccaatgcaggaaggtgagctacagtgag 608
Query: 443 accaaaacaaacaaacagcaggggatgaggctgcagctcagtttgatcttcaaaatatga 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 accaaaacaaacaaacagcaggggatgaggctgcagctcagtttgatcttcaaaatatga 548
Query: 503 cagtgtgacagggcatgcttagcactccagagagaggagcagcagcttgtgatacctgag 562
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 547 cagtgtgacagggcatgcttagcactccagagagaggagcagcagcttgggatacctgag 488
Query: 563 aacctatctttacaagagaaagataagataaactataatgtggccagaggc 613
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aacctatctttacaagagaaagataagataaactataatgtggccagaggc 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
