BAC Information

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BAC

Clone NameMSMg01-061J12
Chromosome9 (Build37)
Map Location 91,221,681 - 91,221,987
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039777, LOC100039925, EG434428, LOC621576
Downstream geneZic1, Zic4, LOC331000, Plscr1, Plscr2, 1700057G04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061J12.T7 (MSMg01no061_j12.b1)MSMg01-061J12.TJ (MSMg01no061_j12.g1)
ACCAG287767AG287768
length787753
length of high quality
(start - end)
307 (71 - 377)192 (71 - 262)
definitionCHROMAT_FILE: MSMg01no061_j12.b1 PHD_FILE: MSMg01no061_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:37 2005CHROMAT_FILE: MSMg01no061_j12.g1 PHD_FILE: MSMg01no061_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGACTCCGCGGAAT
TCTATAACAATTTCCGATATAAATGCCTACTTCTTATATTGCAGTAAGAT
ACAAGCTGATACACATAAAAACATGTGTGTATACACAAATTCACATGCAT
GTACATGAAGCTATTACACAAAGCGATAGGAAACAGAAATTTTGCTTCAA
ATCTCACTTCTTCAGTTCACTACTAATCCATTCATAGCATCATTTTAATC
TGTCCATCAAGATAAGTTATATCTCTATTTTATTGCCCAATCATTTTCAA
TTTTTAAGTACATTATATTTCTGGCTCCACATTTATGTGTTAATGCCTTT
ATGCCTTCATACTTCCTAATCACGTGTTCAATGAAGATTTGTGCTTGCTG
TTGCTATTGTTAGTAGCCACCATATTTTTGGTCAATGTTAGATTTTCTCC
AACTTTTTGAAAAAGTCTAATGCCTTTTCTTTTTTCCTTTTTTTTATTCT
TTATGGACAGGATCTCTCTGCATAACCCACTTACTCATGAAACTCTCTCA
TTTATAACTACGCTGAACCTTGTACTGTATTAGTATTGATATCCATCACC
TCTCTAGCTACCCATAAAGTACCCCATATACCTGATATCTAATCTCTTAC
ATATTATATAAACATTCAATGCATTAATATTACATATTATATAGGCTTTT
AATTAATTCGAATGTATATTAACACTACACTATTAAACTTACTATTTCTT
GTATATTATTTTTGTCCCATATCTCATTTCTTTATTA
ATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTATCTCAGGAATTCACATGTACCTACACAATTGAATGAT
CAATTATAAGTGTGGGGGTATTTTGATGTGTATGAACGTTTTGCTATGTG
TATTTCTATGCACCATACACATGCTCACAGAGCCCATGGAGGCCAGAAAA
GGGCATTGGATCCCCTGGGACTAGAATTACAAATGATTGCGAGCTGCCAT
GATGATGCTGAGAGCTGAGCCCCCCAGGTCCTCTGTTTAAGCAGCCACTG
CTCTTACCACATCAGCCACCTCTTTAGCCCTATGAATGATCAATTTGAAT
ACCCTGCAAATCTTACGCATCACCGACTAATACACATCACCTATTATCAG
CATTTGACATTCTCGGCCCCCCCCCGCACCTTTCCCTTTTCTCCTATATT
AACAATTATTCCGTTACACTCTTAATCACCCCATCCTCCGCCATCCCTCT
CATATTCTTTCCCCTTTCTCTCCTACTTTTGCCCCTCCATCCCTCCCATT
TCTCCTTTTCTCACTTTTCTTCTTTTTTCCTCCTTTTCACTTCATTTCTT
CTTCTCTCTCCCCTTCTCAACGTTTTTCCCTTTTTTCCCTCCGATCTATT
CCCTCCCTTCCCCCCCCATTTTTTTTCCCTCTCCTATTTCTCCCCCCCCT
TTCCCCCCCCTTTCTCCCCCCCTTTCTCTTCCCCCTTTTCCCTCCCCTCC
TTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_j12.b1 MSMg01no061_j12.b1 CHROMAT_FILE:
MSMg01no061_j12.b1 PHD_FILE: MSMg01no061_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:37 2005
         (307 letters)



>mm_chr9_91221481_91222187
          Length = 707

 Score =  578 bits (299), Expect = e-169
 Identities = 305/307 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgcctacttcttatattgcagtaagatacaagctgatacacataaaaacatgtgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 aaatgcctacttcttatattgcagtaagatacaagctgatacacataaaaacatgtgtgc 260

                                                                       
Query: 61  atacacaaattcacatgcatgtacatgaagctattacacaaagcgataggaaacagaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacacaaattcacatgcatgtacatgaagctattacacaaagcgataggaaacagaaat 320

                                                                       
Query: 121 tttgcttcaaatctcacttcttcagttcactactaatccattcatagcatcattttaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgcttcaaatctcacttcttcagttcactactaatccattcatagcatcattttaatc 380

                                                                       
Query: 181 tgtccatcaagataagttatatctctattttattgcccaatcattttcaatttttaagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtccatcaagataagttatatctctattttattgcccaatcattttcaatttttaagta 440

                                                                       
Query: 241 cattatatttctggctccacatttatgtgttaatgcctttatgccttcatacttcctaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattatatttctggctccacatttatgtgttaatgcctttatgccttcatacttcctaat 500

                  
Query: 301 cacgtgt 307
           || ||||
Sbjct: 501 catgtgt 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)