BAC Information

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BAC

Clone NameMSMg01-062D11
Chromosome9 (Build37)
Map Location 18,331,587 - 18,331,889
singlet/doubletsinglet
Overlap geneMuc16
Upstream geneLOC244710, LOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1
Downstream geneOlfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062D11.T7 (MSMg01no062_d11.b1)MSMg01-062D11.TJ (MSMg01no062_d11.g1)
ACCAG288242AG288243
length1,2581,192
length of high quality
(start - end)
308 (130 - 437)686 (138 - 823)
definitionCHROMAT_FILE: MSMg01no062_d11.b1 PHD_FILE: MSMg01no062_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:34 2005CHROMAT_FILE: MSMg01no062_d11.g1 PHD_FILE: MSMg01no062_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCTTTTNTNTAATCACTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACAATAAANAAAGGTACAATAAAAGATTAGGNAGANAAA
CAGACACTAGAAATCAGCCTTTAAATATCTGGAAGGCCTGAGTATAATAA
GTAGTATCTGATAGATGGGTAAAATGATTATATGTGGCAGATGTATGGAT
ATATAGACAGGTGTGTCACATATATAAGGACAGGAGGATGTATGTTTCAA
TAGATAAAGAAAAAAAGAAACTATGAACTAACAAATGGACAGTGGTATGG
GTTTATCAATGAATGGTGTATGAGTGAATAAATACAATCATGAATAAAGG
AGGCAGAGACAGAAGGAACAAACGAAATACAAAAGAATGCACAGGAAAAT
TGATTTTTGGATGGGTGGGTGGATGGATGGATGTATGNATNTTTTTTTCT
CCCTTTTTTTTTCCCCCCTCTTTTTTTCTTTTTCTTTTTTTCCTCTTCTT
TTTTTCTTTTTTTTTTTTCCTTCTTTTCTTTTTTTTTCTTTCTTCTTTTT
TTTTTTCTTTTCTCTTTTTCTTTTTTTTTCTTTTCTTTTTTTTTTTTTTT
TTTTTTTTTCTTTTTCTTTTCTTTCTTCTTCTTTTTTCTTTTTCTTCTTT
TTTTTTTTCTTTTTTTTTTTTTTTTTTTTTCTCTTTTTTTTTTTTCTTTT
CCCTTTTTTTTTTTTTTTTTTTTCTTTTTTCCTTCTCTTTTTTTTTTTTT
TTTTTTTTTCTTTTTTTTTTTTTTTTTTTTCTTTTTTTCTTTTCTTTTTC
TTTCTTTTTTCTTTTTCTTTCTTTTTTCTTTTTTTTTTTTTTTTTTTTTT
CTTTTTTTTTTTCTTTTTCTTTTTTTTCTTTTTTCTTTTCTTTTATTCTT
TCTCTTCTTTTCTTTTTTTTTATTTTTCTCTTTTTTTTTCTTTTCTTTTC
TACTCTTTTCTCTTTTTTACTCTTTTTTTAATATATTATANTTTTTTCTT
TCTTTTATCTTTTTATCTCATTTTCTTTATTTTCCTTTTTCTTATTTTTA
TATCTTTTTTATTTTCACTTTCTCTTATCTTCTCTTCTTCATTAATATCT
TTCTTTCTTNATCTTTATTATTCTTCTTTTNTTTTTCTTTCTTTTATTTT
TTTTTCATTTTACATTCTTCATTATTCAATCTATCTATTCTTTTTCTTTT
TTTATATATCTTTTTTCTTTATTTTTACTTTTCTTATTTTTATATTTCTT
TTCTCTCT
CCACCCTTTTNNTTAAACATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTAAAGCCCCCTTCAAAGAAGA
CCTAACACCAAAACTTCCCTTAATATTCTCCAAAACAGAAACAGAAGGAA
CACTATCCAATACACTCTATGAAGCCACAGTTACACTGATACCTATACTA
CACAAATACCAAAGAAAGAAAGAGAACTTCGGACCAATTTCCACCATGAA
TATTGATGCAGAATAACCAATAAAATTCTTCCAAATGGAATCCAAGAACC
AATCCAAACAATCATTCACCATGAACAAGTAGGCTTCATCCCAGGGATGC
AAGGATGGATCAATATATAGAAATCCATCAATGTAATCCACTATGTAAAC
AAACTCTTAGAAAAAAACTACATGATCATCTCATTAGATGCTGAAAAACT
CTGACAAAAATACAACACCACTTCATGTTAAAAGTATTGGAAGTATCAGA
AATTCAAGATCCATGCCTAAATGTAATAAAAGCAATATACAGCAAACCAA
TAACCAACATCAAACTAAATGTAGAGAAACTTGAAGCAATCCCACTAAAA
TCAGGGATAACACTAGGCTGCCTACTCACTCTCTCCATCTATTCTATATG
GTACTTGAATTTCTAGCTTGAGCAATTAGGCAACAAAAGGAGATCAAAGG
GATACAAATTGGAAAGGAGGAAGTCAAGATATCACTATTTGTGAATGATA
TGATAGTATACGAAGTGACCCCCCCAAAAAAAAAAATCTATGAGAGAACT
CCTACAGCTGGTAATCAACTTCACCAATGTGGCCGGATATAAAATTAACT
TCAACAAATCAGTAGCCTTTTTTCTACTCAAGGGATAAATGTGCTGAAAT
AGAAGATAGGGAAATGAACCCTTTTACAGTAGTCACAAATAATATAGAAT
AAATTGTTGTGACACCAACCAAGCAAGTGAAAGATCTCTTTGGCCAGAAA
CCTCAGGGCTCTGAATAAAGAAATTGAAGAAAAATCTCCAAAAAAGTGGG
AAAAACCTCCCATGCTCGAAGGAATTGCCGGGNATTAACCGAAGATAAAA
TGGGCCCTCTCCTCCAAAAGGGAAATCTACCGAATTCCGGGGCAAAACCC
CCTAAAAATTCTCCACCTCAATTGGTTTCATAAAGTGTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_d11.b1 MSMg01no062_d11.b1 CHROMAT_FILE:
MSMg01no062_d11.b1 PHD_FILE: MSMg01no062_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:34 2005
         (308 letters)



>mm_chr9_18331416_18332122
          Length = 707

 Score =  497 bits (257), Expect = e-145
 Identities = 293/305 (96%), Gaps = 3/305 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaaggcctgagtataataagtagtatctgatagatgggtaaaatgattatatgtggca 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 474 tggaagggctgagtataataagtagtatctgatagatgggtaaaatgattatatgtggtg 415

                                                                       
Query: 61  gatgtatggatatatagacaggtgtgtcacatatataaggacaggaggatgtatgtttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gatgtatggatatatagacaggtgtgtcacatatataaggacaggaggatgtatgtttca 355

                                                                       
Query: 121 atagataaagaaaaaaagaaactatgaactaacaaatggacagtggtatgggtttatcaa 180
           |||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 354 atagataaag-aaaaaagaaaatatgaactaacaaatggacagtggtatggttttatcaa 296

                                                                       
Query: 181 tgaatggtgtatgagtgaataaatacaatcatgaataaaggaggcagagacagaaggaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tgaatggtgtatgagtgaataaatacaatcatgaataaaggaggcagagacagaaggaac 236

                                                                       
Query: 241 aaacgaaatacaaaagaatgcacaggaaaattgatttttgga-tgggtgggtggatggat 299
           ||| |||||||||||||||||||||||||||||||   |||| | |||||||||||||||
Sbjct: 235 aaatgaaatacaaaagaatgcacaggaaaattgatagatggact-ggtgggtggatggat 177

                
Query: 300 ggatg 304
           |||||
Sbjct: 176 ggatg 172


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 707
Length adjustment: 9
Effective length of query: 299
Effective length of database: 698
Effective search space:   208702
Effective search space used:   208702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)