BAC Information

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BAC

Clone NameMSMg01-062G04
Chromosome9 (Build37)
Map Location 33,315,031 - 33,315,588
singlet/doubletsinglet
Overlap genenone
Upstream geneFli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343, Kirrel3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062G04.T7 (MSMg01no062_g04.b1)MSMg01-062G04.TJ (MSMg01no062_g04.g1)
ACCAG288372AG288373
length1,2131,170
length of high quality
(start - end)
674 (85 - 758)639 (126 - 764)
definitionCHROMAT_FILE: MSMg01no062_g04.b1 PHD_FILE: MSMg01no062_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:55 2005CHROMAT_FILE: MSMg01no062_g04.g1 PHD_FILE: MSMg01no062_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGTTCTGTNNNNTATCAGTGGGCGCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTCTTTCAATAGCCCGACCGTTATAGTATGAGTTTTATGTGTAT
TCAGAAGATAGAAGCCGCAGAAACATTTTCTAAGCCTTTTTATGAGGCCA
ATATTACCTTAAAGATCTAATAAAACTATAGATAAGTATCTCTCAGGAAC
ATTGATGCAGATTCTTAAAAAAATATTAGCAAATGAAATCCAATAAATGT
ATAAAACGAATTATACATCATCATCAAGTGGAATTTATCACAGATACTGG
CTCAGCCTTTGAAACTCAATTAACATAACCCTACTGATGAACTGAAGAAG
AAAAAAATGTATGATCGTCTTAATGCACAAAGAGCTAAGTAAAGTGACAA
AATGCAACTTGTTCTCTTTAAAAAAAAACAATAAAGTAGGGAATGGAAGT
GTATTTTGTTTTTGTCAACTTGACAGTAAACTAATTATCTGGGAAGACAG
AACCATAATTAAGAAAATACCTACATAAGATTGTCCCATTTCCAAGACTA
TGAAGGAGATTTTCCACATTACTGATTGATATGGGAGTGTCATTGAGTGT
ATTTCCATGCCTGGACAGGCAGTTCTGGGGTGTATAAGAAACTAAGATGA
GCATGACATAGTGCACAAGCTGATGAACAATGTTTCTCCATAGTCTTGTC
TTTGATTCTTGCCTCCATATTCCTGCCTTGAGTTCCTGCCCTAACATCCT
TTAGTGGTACCAGGAGTCTGATAATGATGTGACAAACCTGTCCATATTAC
TGGGAGGATTGTGAACAGACTTTGGGTTAGAAGATTCATTCAGTGTTCTG
AGGTTAATGGACTATTTTTGTGGGAGAATTATAAAATATATTGTTGATTA
TCATTGCCAACCATATGCCCTTTCTTCGGAATTTTCTAAATAATTGATAT
GATTTTTATATCCATTTCTGTGTCTTTTTGTATTGTAAAATCTCCTTTTA
GAGGATATCTTTTATTCTTGCTTGTGAAAATTTAATGCGTGGCTACTGGG
ATTTTGAGTAACTTCTCTCTTTGTTTTAAATAATTCTCCTTTTTTTGTTA
TCCATATTATTTTCTCAAAATTATTTTCTGTGTTGTCTGTAATCATTTAC
TTTTTGTTCTCTCCAACTTTAGTATTCATCCTCCTTATTTTTTCTCTATT
ACATATCTATCAA
CCATTTTTTTTNNNATTCAGTGAGNCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTATAAATGCTTTTGGATATTA
GCCCTCTGTCAGATGCCCTTTTGGTAAAGATATTTCCCTATTCTGTAGGC
TACCATTTTGTCCTAGTATCCTTTATCTTACAGATGCTTTTCAGTTTCCT
GAGGTCTCATTTAGTAATTATTGATCTTAGTGAACATATTTGTCATGGAA
GAATCAACAGGATTCAAAAGAACAATTGTGAGATATGAATGATAATTAAA
ATAAATATGACATGTAGAGGATTAACAAAATTGATACATTATCCATAATA
GTCAAAACATGAAAACAACCCATCTATCAACAGCTGAATGTGTAAATGTA
GGATTATGTAGATAGTCAGGTGTGTTAAACCATAGAAAAGTGAGACGTTG
GTATAAAGGTAACACTATTGGTCAACCTTAAAAATGTGCTAAATGAAATA
AATCAGCAATTTATAAACACATGCACACACATGTACAGACACATATACAA
CTTCTTTATGATTTCCTTGGCATGTGGTAGAATCAGTGAGTTTATATATA
GAGAAAGTGGGTTAGAAATTGCCACAGTTTGGGAGAAAAGAGATGTTTAA
GCCATTGCTTAAGGGTACAGCTGCCTTTTGAGATTATGATAATGCTTTAG
AAGCAGACAATGGTGTGCTTGCACTTCCTAACTCTAATAAGGTTACCTAG
TTATGAACTTGTCATAATTGATATTGCAAATTTTATTTTATCAAAATACA
AATAAATACCTCGGAGATCTCACCACGTATCAAAAGGCTGAGAGCTCTCA
AGGTCCAGAACTGAGCACTGTTTCGAAGTGACTGTTTGTTTATTTGTTAA
GCCCAGAAGCTGGTGAGTCCAATGTGTACCCCGTAGTTAATTTGTTCCAA
GCTGGATTTTCATCTCTTGATCTTTCCGTAATCTTCACCATAATAAATTC
CTTTTTTGTTTGGATTTTCTTGGGTCAAGTTTTCTTTTATACATTTGTTT
TCTGTTACCCCCTTTTATCTTCTGTAGTTTTTCTTTCTTTTACTTTTTAT
CTTATAATATCCCTAAAATCCTTTCTCTTTTTGTAGTTAACCTCATTTAC
ATAGTGTTTTTATACCTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_g04.g1 MSMg01no062_g04.g1 CHROMAT_FILE:
MSMg01no062_g04.g1 PHD_FILE: MSMg01no062_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:55 2005
         (639 letters)



>mm_chr9_33314551_33315588
          Length = 1038

 Score = 1021 bits (528), Expect = 0.0
 Identities = 552/560 (98%), Gaps = 3/560 (0%)
 Strand = Plus / Minus

                                                                        
Query: 81   ctcatttagtaattattgatcttagtgaacatatttgtcatggaagaatcaacaggattc 140
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1038 ctcatttagtaattattgatcttagtaaacatatttgtcatggaagaatcaacaggattc 979

                                                                        
Query: 141  aaaagaacaattgtgagatatgaatgataattaaaataaatatgacatgtagaggattaa 200
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978  acaagaacaattgtgagatatgaatgataattaaaataaatatgacatgtagaggattaa 919

                                                                        
Query: 201  caaaattgatacattatccataatagtcaaaacatgaaaacaacccatctatcaacagct 260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918  caaaattgatacattatccataatagtcaaaacatgaaaacaacccatctatcaacagct 859

                                                                        
Query: 261  gaatgtgtaaatgtaggattatgtagatagtcaggtgtgttaaaccatagaaaagtgaga 320
            ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 858  gaatgtgtaaatgtaggaaaatgtagatagtcaggtgtgttaaaccatagaaaagtgaga 799

                                                                        
Query: 321  cgttggtataaaggtaacactattggtcaaccttaaaaatgtgctaaatgaaataaatca 380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798  cgttggtataaaggtaacactattggtcaaccttaaaaatgtgctaaatgaaataaatca 739

                                                                        
Query: 381  gcaatttataaacacatgcacacacatgtacagacacatatacaacttctttatgatttc 440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738  gcaatttataaacacatgcacacacatgtacagacacatatacaacttctttatgatttc 679

                                                                        
Query: 441  cttggcatgtggtagaatcagtgagtttatatatagagaaagtgggttagaaattgccac 500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678  cttggcatgtggtagaatcagtgagtttatatatagagaaagtgggttagaaattgccac 619

                                                                        
Query: 501  agtttgggagaaaagagatgtttaagccattgcttaagggtac-agctgccttttgagat 559
            |||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 618  agtttgggagaaaacagatgtttaagccattgcttaagggt-ctagctgccttttgagat 560

                                                                        
Query: 560  tatgataatgctttagaagcagacaatggtgtgcttgcacttcctaactctaataaggtt 619
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 559  tatgataatgctttagaagcaga-aatggtgtgcttgcacttcctaactctaataaggtt 501

                                
Query: 620  acctagttatgaacttgtca 639
            ||||||||||||||||||||
Sbjct: 500  acctagttatgaacttgtca 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1038
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1028
Effective search space:   646612
Effective search space used:   646612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)