Query= MSMg01no062_j14.b1 MSMg01no062_j14.b1 CHROMAT_FILE:
MSMg01no062_j14.b1 PHD_FILE: MSMg01no062_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:21 2005
(670 letters)
>mm_chr9_28013913_28014987
Length = 1075
Score = 1208 bits (625), Expect = 0.0
Identities = 661/675 (97%), Gaps = 5/675 (0%)
Strand = Plus / Minus
Query: 1 cctagggatcgctgcatagcctgactaccctaattggttaggtctatcccaatgatagac 60
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 750 cctagggatcgctgcatagcctgactagtctaattggttaggtctattccaatgatagac 691
Query: 61 cctttctcaaagaaagtggactgtctttctgaggatgatactccaggttgtcc-ttgacc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 690 cctttctcaaagaaagtggactgtctttctgaggatgatactccaggttgtcctttgacc 631
Query: 120 tctttaacacatgcactcaaacatgaagctattgcatatacaatcataggagaacgttct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tctttaacacatgcactcaaacatgaagctattgcatatacaatcataggagaacgttct 571
Query: 180 tggtcatgttgatgagtgtttacatgattagtttatgcatttagttgtattatgctttct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tggtcatgttgatgagtgtttacatgattagtttatgcatttagttgtattatgctttct 511
Query: 240 gtaattattttagaatatagttgttctcataacaatgtttcttgttaccccagaagctgt 299
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gtagttattttagaatatagttgttctcataacaatgtttcttgttaccccagaagctgt 451
Query: 300 tttacacagctcagtttta----gacttttgcttgcatcaagagatcatgttgagtaaat 355
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 450 tttacacagctcaggtttacagcgacttttgcttgcatcaagagatcatgttgagtaatt 391
Query: 356 gagcaaaagtccctggtccctgcaaagatactttgtgagagtcactcaatgataaaatcg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gagcaaaagtccctggtccctgcaaagatactttgtgagagtcactcaatgataaaatcg 331
Query: 416 ctgaaagataaattcctcacaagatgtgcctactgatgacacaagaaggtcacctcctct 475
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 330 ctgaaagataaattcctcacaagatgtgcctattgatgacacatgaaggtcacctcctct 271
Query: 476 gtagttaatggatcagtcatgcccaggatctacatttgaactgcaattacttgaactttc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gtagttaatggatcagtcatgcccaggatctacatttgaactgcaattacttgaactttc 211
Query: 536 agtaacacagtgttttagttgcagtttctactgctgtgatgaagcaccattgtcaaagac 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 agtaacacagtgttttagttgcagtttctactgctgtgatgaagcaccattgtcaaagac 151
Query: 596 aacttggggaggaatgggtatgtttggcttacccgtccatatcacagttcatctctgaaa 655
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 150 aacttggggaggaatgggtatgtttggcttacccgtccatatcacagttcatcactgaaa 91
Query: 656 gtagtcaggacggta 670
|||||||||||||||
Sbjct: 90 gtagtcaggacggta 76
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1075
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1065
Effective search space: 702900
Effective search space used: 702900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_j14.g1 MSMg01no062_j14.g1 CHROMAT_FILE:
MSMg01no062_j14.g1 PHD_FILE: MSMg01no062_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:21 2005
(724 letters)
>mm_chr9_27916288_27917408
Length = 1121
Score = 1286 bits (665), Expect = 0.0
Identities = 709/727 (97%), Gaps = 9/727 (1%)
Strand = Plus / Plus
Query: 1 ggtttatgaaatacaatttcgaggaagccct---tgtcagatgcttaccccagaaggctt 57
|||||||||||| |||||||||||||| | |||||||||||||| |||||||||
Sbjct: 201 ggtttatgaaat-caatttcgaggaag---taaatgtcagatgcttacaaaagaaggctt 256
Query: 58 acaaaggaaaaggtggccttgtgttgctcactacctagatgcttcagaggccaagaccat 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 acaaaggaaaaggtggccttgtgttgctcactacctagatgcttcagaggccaagaccat 316
Query: 118 tggctgtgggcattttactatcagaggaaggctgtactttgtattttctgagatcccctt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tggctgtgggcattttactatcagaggaaggctgtactttgtattttctgagatcccctt 376
Query: 178 gcaccttgaaacccacacctcctctggcttttgcagaggcgccttctgagtgtgacgata 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gcaccttgaaacccacacctcctctggcttttgcagaggcgccttctgagtgtgacgata 436
Query: 238 actgtcataacagaagccgccccccccccaccgccatctcctgctcctggtggcccctat 297
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 437 actgtcataacagaagccg--ccccctccaccgccatctcctgctcctggtggcccctat 494
Query: 298 tcatcacttacaaggctccgaaggaatcaaagggtaaggatgtgagattatgtactggaa 357
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 495 tcatcacttacaaggctccgaaggaatcaaagagtaaggatgtgagattatgtactggaa 554
Query: 358 agaggtaagctgaaatggggctaggattggattcaaccaggcagccagcttcatttagtg 417
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ataggtaagctgaaatggggctaggattggattcaaccaggcagccagcttcatttagtg 614
Query: 418 ccttgtacagtcttattaggaaaactcacccatccagaacagctctgactgtgttccgac 477
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 615 ccttgtacagtcttattaggaaaactcacccatccagaacagctctgactgtgctccgac 674
Query: 478 tgcaagaagggtgggctggacatgctgcaggtgcaaggggcttccttccctctgcatgct 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tgcaagaagggtgggctggacatgctgcaggtgcaaggggcttccttccctctgcatgct 734
Query: 538 ttttatgccttctgcctggttagctcaccctggtgcaagcccactcctgcctcctaggtc 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ttttatgccttctgcctggttagctcaccctggtgcaagcccactcctgcctcctaggtc 794
Query: 598 tgcttcctctgagacatcttccagaagaatttttctttgcctcatcaagagtcctgtagg 657
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 795 tgcttcctctgagacatcttccagaagaatttttctttgcctcatcaagagccctgtagg 854
Query: 658 ccactggggcatgtgttttccctctgttcctgcggactgagagcagagcataataccctc 717
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 855 ccactggggcatgtgttttccctctgttcctgcggactgagagcagagcatagtaccctc 914
Query: 718 ctcatgt 724
|||||||
Sbjct: 915 ctcatgt 921
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 724
Length of database: 1121
Length adjustment: 10
Effective length of query: 714
Effective length of database: 1111
Effective search space: 793254
Effective search space used: 793254
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
