BAC Information

Click to search

BAC

Clone NameMSMg01-062K01
Chromosome9 (Build37)
Map Location 28,247,820 - 28,248,656
singlet/doubletsinglet
Overlap geneOpcml
Upstream geneLOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062K01.T7 (MSMg01no062_k01.b1)MSMg01-062K01.TJ (MSMg01no062_k01.g1)
ACCAG288558AG288559
length1,1331,172
length of high quality
(start - end)		769 (88 - 856)836 (90 - 925)
definitionCHROMAT_FILE: MSMg01no062_k01.b1 PHD_FILE: MSMg01no062_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:25 2005CHROMAT_FILE: MSMg01no062_k01.g1 PHD_FILE: MSMg01no062_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTATCTTTTTNTGGCAATGGGCGCTNXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATAAATTCATTCTTCCTATTAGATGAGTAGTACTCCAT
TGTATAAATGTACCACACCTTCTGTATCCATTCCTCCGTTGAGGGGCATC
TGGGTTCTTTCCAGCTTCTGGATATTATAATAAGGCTGCTATGAACATAG
TGGAGCATGTGTCCTTCTTATCGTTTGGAACATCTTCTGGATATATGCCC
AGGAGAGGTATTGCAAGATCCTCCGGTAGTACTATGTCCAATTTTCTGAG
GAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACC
AACAATGGAGGAGTGTTCCTCTTTCTCAACATCCTTGCCAGCATCTGCTG
TCAGCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCT
CAGGGTTGTTTTGATTTGCATTTCCCTGCTGATTAAGGACTTTGAACATT
TTTTCAGGTCCTTCTCAGCCATTTAGTATTCCTCAGGTGAGAATTCTTTG
TTCAGCTCTGAGCCCCATTTTAAATGGGGTTATTTGATTTTCTGGAGTCC
ACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGATTT
AGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCATTTTGTCTTAT
TGATGGTGTCTTTTACCTTGCAGAAGCTTTGCAACTTTATGAGGTCCCAT
TTGTCGATTCTCGATCTTATAGCACAAGCCATTGCTGTTCTATTCAGGGA
TTTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCTACTTTCTCCTCTA
TAAGTTTCAGTGCCTCTGGCTTTATGTGGAGTTCCTTAATCCACTTTAAA
TTGACCATAGTACAAGGGAGATAGGAATGGATCAATTCACATTTCTTCTA
AATGAAAACTGCCCGGTTTTGCCAGCACCCTTTTGTTGAAAAAGGGTTTC
TTTTTTTCCCCCGGGAAGAGTTTTTAAAACCCCCTTGCTCAAAAAAAAAA
GTGGGACCCTTAAGTGGGGGGGGAAAGTATTACTCTTGGGGGGTTTCTCA
ATTTTTTTTCCCATCGTGGCCACAACTTGGTTG

NCCGGCTTTTTTTTTTTACCATGTGATGCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAGGCAACATTACAG
GGGAGACTTCAGACAATGCCCTGGGACAGTTTCTCAATATGAACAGTCAC
ATGAAGGGCATCCTACGCTGAGGTCCATGCCTTCCCATACTGCACATATC
TGTACTTTGTTTATGCGAGGGTAGGTTGACCATCTGTTAGTCATTTCAGA
AAAAGCCCTTTCTCTGACACACATACGCAAGACAGAACACTCTTATATTT
TCTGTGTGTCTAAGACCAGAAACGTTTGAGTTCAGTAACAACCACACAAA
GATGAATCATGTCATGTCTTATGAAAGAAATGTCAGGCGAGAAATGTCAG
TGCAGCCTAATGGTAAGGGGATAGAATGGTGACCACACACCTACAGCCCC
AGTGGAGGAGACCCAATGGCATAAAGAAGAAGCCAGCCTGGAAGGAGCAC
CTCCCAATTGACCAGAAAAATCAGCTTTCAGACCTCCCTGGGCAAAGTGC
CAGGGTGGCAACACCAGAGGAGATGCTTCTCTGGGCATTTCATTCCATTG
TCAGCTGTCATATCAGTGCTGGACAATGTCACTCCAAACAGGAAAGCTGT
GGGGTCCAAGAAATGCCAAGAAAATGGCATCGGGTGGGCAAGGCAAGCGC
CAGCCTCCCCTGCTAATGAATGCAGCAGATGTGGCATTTCTGACAATATT
GCTTCTGCCTCACTTGCCATTTAATGTTAAGAGGCTTCTAGAGTCTACTG
CATTTAAAGAGTAATGACTGTTTTCAGGGTAAATGCTCTGTTAAATAACC
CTGGATTATTGTGTCGTGTTATTACATTTATAAAATGGCATTTCAAAAAA
TAATAATTGTTTTAGAGTTAATTGATGTTTTTAACCATCACTGTGTGGAA
GATTTTTTATTCAGCAAACAGGGAGTGAGCAAGGGAGGAAAAGATTTTCC
TTTGGGAGAGTCCCACTGAAAAATAAAAAGCCCTGCCTGCCCCTGAAATA
CTGGGGACCTAAACCCCCTCCTCCTCCTGGGTGGCCTTCAAAAAAATCCC
TTTTCCCGCGGTTTAAAGCACCCCAAAAAAAAAGGTAAGTCCCCCCCCTC
CCCCCAGGGAAGGTCCCAAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_k01.g1 MSMg01no062_k01.g1 CHROMAT_FILE:
MSMg01no062_k01.g1 PHD_FILE: MSMg01no062_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:25 2005
         (836 letters)



>mm_chr9_28247620_28248856
          Length = 1237

 Score = 1556 bits (805), Expect = 0.0
 Identities = 829/837 (99%), Gaps = 1/837 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    caacattacaggggagacttcagacaatgccctgggacagtttctcaatatgaacagtca 60
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1037 caacattacaggggagacttcagacaatgccttgggacagtttctcaatatgaacagtca 978

                                                                        
Query: 61   catgaagggcatcctacgctgaggtccatgccttcccatactgcacatatctgtactttg 120
            |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 977  catgaagggcatcctatgctgaggtccatgccttcccatactgcacatatctgcactttg 918

                                                                        
Query: 121  tttatgcgagggtaggttgaccatctgttagtcatttcagaaaaagccctttctctgaca 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917  tttatgcgagggtaggttgaccatctgttagtcatttcagaaaaagccctttctctgaca 858

                                                                        
Query: 181  cacatacgca-agacagaacactcttatattttctgtgtgtctaagaccagaaacgtttg 239
            |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 857  cacatacgcagagacagaacactcttatattttctgtgtgtccaagaccagaaacgtttg 798

                                                                        
Query: 240  agttcagtaacaaccacacaaagatgaatcatgtcatgtcttatgaaagaaatgtcaggc 299
            ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 797  agttcagtaacaaccacacaaagatgaatcacgtcatgtcttatgaaaggaatgtcaggc 738

                                                                        
Query: 300  gagaaatgtcagtgcagcctaatggtaaggggatagaatggtgaccacacacctacagcc 359
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737  aagaaatgtcagtgcagcctaatggtaaggggatagaatggtgaccacacacctacagcc 678

                                                                        
Query: 360  ccagtggaggagacccaatggcataaagaagaagccagcctggaaggagcacctcccaat 419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677  ccagtggaggagacccaatggcataaagaagaagccagcctggaaggagcacctcccaat 618

                                                                        
Query: 420  tgaccagaaaaatcagctttcagacctccctgggcaaagtgccagggtggcaacaccaga 479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617  tgaccagaaaaatcagctttcagacctccctgggcaaagtgccagggtggcaacaccaga 558

                                                                        
Query: 480  ggagatgcttctctgggcatttcattccattgtcagctgtcatatcagtgctggacaatg 539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557  ggagatgcttctctgggcatttcattccattgtcagctgtcatatcagtgctggacaatg 498

                                                                        
Query: 540  tcactccaaacaggaaagctgtggggtccaagaaatgccaagaaaatggcatcgggtggg 599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497  tcactccaaacaggaaagctgtggggtccaagaaatgccaagaaaatggcatcgggtggg 438

                                                                        
Query: 600  caaggcaagcgccagcctcccctgctaatgaatgcagcagatgtggcatttctgacaata 659
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437  caaggcaagcgccagcctcccctgctaatgaatgcagcagatgtggcatttctgacaata 378

                                                                        
Query: 660  ttgcttctgcctcacttgccatttaatgttaagaggcttctagagtctactgcatttaaa 719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377  ttgcttctgcctcacttgccatttaatgttaagaggcttctagagtctactgcatttaaa 318

                                                                        
Query: 720  gagtaatgactgttttcagggtaaatgctctgttaaataaccctggattattgtgtcgtg 779
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317  gagtaatgactgttttcagggtaaatgctctgttaaataaccctggattattgtgtcgtg 258

                                                                     
Query: 780  ttattacatttataaaatggcatttcaaaaaataataattgttttagagttaattga 836
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257  ttattacatttataaaatggcatttcaaaaaataataattgttttagagttaattga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 836
Length of database: 1237
Length adjustment: 10
Effective length of query: 826
Effective length of database: 1227
Effective search space:  1013502
Effective search space used:  1013502
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |