Query= MSMg01no062_n20.b1 MSMg01no062_n20.b1 CHROMAT_FILE:
MSMg01no062_n20.b1 PHD_FILE: MSMg01no062_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:54 2005
(753 letters)
>mm_chr9_6010736_6011887
Length = 1152
Score = 1286 bits (665), Expect = 0.0
Identities = 733/759 (96%), Gaps = 7/759 (0%)
Strand = Plus / Plus
Query: 1 ctacctagggcattggtgaaggccaggaagcacagttcaattttgctcacgtatttggca 60
|||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||
Sbjct: 195 ctacctagggcattggtgaaggccaggaagcaaagttcaattttgcttaggtatttggca 254
Query: 61 agtcattgcttggaggcacctataacaaaacaatactaaaaggaagcacacagatccatt 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 255 agtcattgcttggaggcacctattacaaaacaatactaaaaggaagcacacagatccatt 314
Query: 121 cgcaaggacaaaattggagcatacgtgctatgcaatgccacagttccaggagactaagtt 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 315 cgcaaggacaaaattggagcatacgtgctatggaatgccacagttccaggagactaagtt 374
Query: 181 tccataaaactctttgcctcaggactgcatccaggcttttggcttgtcatgtgtgtcact 240
||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 375 tccatgaaactctttgcctcaggactgcatccaggcttttggcctgtcatgcgtgtcact 434
Query: 241 actggagtgaatgtatcatgtacccacccacaaactatcatacaggtttatgcacacaaa 300
|||||||||||||| ||||||||||||||||||||| |||||||| |||||||||| |
Sbjct: 435 gctggagtgaatgtagcatgtacccacccacaaactaccatacaggagtatgcacacaca 494
Query: 301 tgcacaacaatatggatatacattgtatgtaaaaaaaaaaaac------cccaacataca 354
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 495 tgcacaacaatatggatatacattgtatgtaaaaaaaaaaaaaaaaaaacccaacataca 554
Query: 355 tgaatactcatttctgtgtgcaaaaaaaacaccacacccttacccccacacaaatacaag 414
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 555 tgaatactcatttctgtgtgcaaaaaaa-caccacacccttacccccacacaaatacaag 613
Query: 415 aataactaaaatgggttgtggttgtggtattggtgatggcagaattttcacctgcagtgt 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aataactaaaatgggttgtggttgtggtattggtgatggcagaattttcacctgcagtgt 673
Query: 475 ttttcttgacctgctgtcatctaacaaacattccagacgttctctcatgtatcagagaaa 534
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 674 ttttcttgacctgctgtcatctaacaaacattccagatgttctctcatgtatcagagaaa 733
Query: 535 ttgtaattagttcagccatttttctaacatgtctacgctttgttaaaatttattgctaca 594
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ttgtaataagttcagccatttttctaacatgtctacgctttgttaaaatttattgctaca 793
Query: 595 caatcttcatatggatcccctaataactggtgcaggggctgtccttaaagctgttgactg 654
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 caatcttcatatgggtcccctaataactggtgcaggggctgtccttaaagctgttgactg 853
Query: 655 tctgtgcaaaacgttccccaaaaagggctgccttgtactacatcagtgggagaggatgtg 714
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 854 tctgtgcaaaacgttccccaaaaaggactgccttgtactacatcagtgggagaggatgtg 913
Query: 715 tctaaccctgcagagatctgatgtgacaccctctcagaa 753
|||||||||||||||||||||||||||||||||||||||
Sbjct: 914 tctaaccctgcagagatctgatgtgacaccctctcagaa 952
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 753
Length of database: 1152
Length adjustment: 10
Effective length of query: 743
Effective length of database: 1142
Effective search space: 848506
Effective search space used: 848506
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_n20.g1 MSMg01no062_n20.g1 CHROMAT_FILE:
MSMg01no062_n20.g1 PHD_FILE: MSMg01no062_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:54 2005
(734 letters)
>mm_chr9_6106603_6107736
Length = 1134
Score = 1060 bits (548), Expect = 0.0
Identities = 577/588 (98%), Gaps = 3/588 (0%)
Strand = Plus / Minus
Query: 150 tttgaagtactctcttgtacttctccacaaaatgcatacagagctattgtt---aaaaaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1134 tttgaagtactctcttgtacttctccacaaaatgcatacagagctattgttaaaaaaaaa 1075
Query: 207 aaaagataaaatttgaatgtttcttactttatagcccaggctggcctagatctcaccatg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1074 aaaagataaaatttgaatgtttcttactttatagcccaggctggcctagatctcaccatg 1015
Query: 267 tgttccaagctagcttttatgcatggaaatattcctccatcagcatcttaggtgctaaca 326
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 tggcccaagctagcttttatgcatggaaatattcctccatcagcatcttaggtgctaaca 955
Query: 327 gtataagtcaccatgcatggtaattattattagcacccctctgtattgcaaaatatcaga 386
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 954 gtataagtcaccatgcatggtaattattattagcaaccctctgtattgcaaaatatcaga 895
Query: 387 attccttatctgtgcaaatgtttctgtattagtattcaactttcccttatacttccttaa 446
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 894 attccttatctgtgcaaatgtttctatattagtattcaactttcccttatacttccttaa 835
Query: 447 aaaaatccatgtcccatctcttttacacaaccaacatcccgtatcttcaattgcccaata 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 aaaaatccatgtcccatctcttttacacaaccaacatcccgtatcttcaattgcccaata 775
Query: 507 tgcctgcaaaaatctatttctatggttgtccttatgcctagcctttgctattgccatatc 566
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 774 tgcctgcaaaaatctatttctatggctgtccttatgcctagcctttgttattgccatatc 715
Query: 567 cctaaagtaagcagacagttcctctcttctctgattgtcattcattcctgaacatctttt 626
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 714 cctaaagtaagcagacagttcctctcttctctgattatcattcattcctgaacatctttt 655
Query: 627 ctggcctggtgtttgcagtccttgtgattcaaagcctgtattactgacctacctcttgtc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ctggcctggtgtttgcagtccttgtgattcaaagcctgtattactgacctacctcttgtc 595
Query: 687 ttcaaaagcagatggtcatttctttgcttttagagatttccctgctgt 734
|||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 594 ttcaaaagcagatggtcatttctttgattttagagatttccctgctgt 547
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 734
Length of database: 1134
Length adjustment: 10
Effective length of query: 724
Effective length of database: 1124
Effective search space: 813776
Effective search space used: 813776
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
