BAC Information

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BAC

Clone NameMSMg01-063B22
Chromosome9 (Build37)
Map Location 92,236,886 - 92,237,194
singlet/doubletsinglet
Overlap gene1700057G04Rik
Upstream geneZic1, Zic4, LOC331000, Plscr1, Plscr2, LOC666850
Downstream genePlscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063B22.T7 (MSMg01no063_b22.b1)MSMg01-063B22.TJ (MSMg01no063_b22.g1)
ACCAG288934AG288935
length687676
length of high quality
(start - end)
317 (41 - 357)284 (59 - 342)
definitionCHROMAT_FILE: MSMg01no063_b22.b1 PHD_FILE: MSMg01no063_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:21 2005CHROMAT_FILE: MSMg01no063_b22.g1 PHD_FILE: MSMg01no063_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAAT
TCTTTATTTTCACATGATCTGGGAACTTGGGGATTGTAGTGGCATTCCTG
GCTTCTCTCCATCACAGTCCAGTGCTACCCATCTCACAAGCTGTAGAAAA
TAGACAAACGACCCCAGCCCTTGACAAGTATCCATATAGTGAAAGACAAT
CGTGTGTTCTATACATAAAGGACAAATTATTGTTCAGAACTCCAAGTTAT
TCTTCTTGGCGGGATGATTTGGTCCTAGAAATAGTAGATCATAATCTTTG
CTTTGGTTTTCTCATTAACACTCTTTTCCATGAACTCGTGCCAAAGCCTT
CATATTTTTCTCGTGACTCACCTGTGACTTTTGTCTCTCAAATTACACAT
TAAAGTGTGAATGGTAAGGATTTTGTGTTATTTTTTTTCCAGGGAGACAT
GAACAGATGTCTTCTCACTCAAGATAGGGCACCACTAACCTATCAAAGTA
ACAACCGTACCAAAGTCCATTTTGAGGATTTTTACAGGACTGTGGGCAAA
AGGTTACATACAGGAGCATGGATGTCTCTTAGGCAGCTGCATCATGGAAA
AGCTTATCACATTCTGGTTGGTTTGTAATTCGCAAAAGGTTCATTCCTAC
AGCTTTCAGCACAACCTTGCAGACAGCTCAAATGTCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAGAACTCATTAAGAAGATCATACTTCATGACCAGTGATTATA
TTTCATGATCCATTTCAAGTGGCCAAGAACCCGGGTCATGCTTATAGAAG
AAAATCTACTCTTACTGTGCTAACAGAACATAGCAATAAAATGACTCTCA
GTGACCTATTGCTATACCCATCGCTTCACTTGACCCTCATCAGAAAAGCT
TCTTGAAGCAGATGGGAAATAACACAGAGACCCACAAGTCGCCAATATAC
AGAGATAAGGATGTGGGATCATTCAGCTCTAAATGGAATGTCTTTTTCTA
CACCTACCCCTCTCAGGTCTTAGGATCTATACAGAAGAGGAGGTAGAAAT
GCTCTAAAAAACAAAAGTGATAAATGACTGTAAGGGAACAGCATCTTCAG
GACACAAGGCCTCACAGAGACTGGGACACATGTACAAGTTTGTTATTGTT
TTTTTCTTGATTGCTTGCTTGTTTTCTGCAACAATTCTTTTTTCTGGACC
TGCATTATGGCACACGATAAGGACCAAACCACAACACAGCGCATGCACAC
TGTATGTCTAACTCTACCATCTTCAGGGTACTTCTGGATGGCATTCCCTC
TACTTTTAATACTTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_b22.b1 MSMg01no063_b22.b1 CHROMAT_FILE:
MSMg01no063_b22.b1 PHD_FILE: MSMg01no063_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:21 2005
         (317 letters)



>mm_chr9_92236680_92237396
          Length = 717

 Score =  559 bits (289), Expect = e-164
 Identities = 304/309 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctttattttcacatgatctgggaacttggggattgtagtggcattcctggcttct 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctttattttcacatgatctgggaacttggggattgtagtggcattcctggcttct 266

                                                                       
Query: 67  ctccatcacagtccagtgctacccatctcacaagctgtagaaaatagacaaacgacccca 126
           |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 267 ctccatcacagtccagtgttacccatctcacaagctgtagaaaatagacaaatgacccca 326

                                                                       
Query: 127 gcccttgacaagtatccatatagtgaaagacaatcgtgtgttctatacataaaggacaaa 186
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct: 327 gcccttgacaagtatccatatagtggaagacaatcgtgtgttctatacataaaggacaag 386

                                                                       
Query: 187 ttattgttcagaactccaagttattcttcttggcgggatgatttggtcctagaaatagta 246
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 387 ttattgttcagaactccaagttattctttttggcgggatgatttggtcctagaaatagta 446

                                                                       
Query: 247 gatcataatctttgctttggttttctcattaacactcttttccatgaactcgtgccaaag 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gatcataatctttgctttggttttctcattaacactcttttccatgaactcgtgccaaag 506

                    
Query: 307 ccttcatat 315
           |||||||||
Sbjct: 507 ccttcatat 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)