BAC Information

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BAC

Clone NameMSMg01-064I08
Chromosome9 (Build37)
Map Location 112,213,481 - 112,213,632
singlet/doubletsinglet
Overlap geneLOC620760
Upstream geneLba1, Dclk3, LOC620615, Stac, 4930545L08Rik, Arpp21, LOC100039341
Downstream geneLOC100043800, EG622110, LOC100039391, LOC100043801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064I08.T7 (MSMg01no064_i08.b1)MSMg01-064I08.TJ (MSMg01no064_i08.g1)
ACCAG289970AG289971
length1,2541,225
length of high quality
(start - end)
416 (45 - 460)152 (505 - 656)
definitionCHROMAT_FILE: MSMg01no064_i08.b1 PHD_FILE: MSMg01no064_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:30 2005CHROMAT_FILE: MSMg01no064_i08.g1 PHD_FILE: MSMg01no064_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGTGCACTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCCCCCCAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
AGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGAAGACGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGC
CCCTCAATTTTTTTATTGCCCCCCCAAAATGTGGTACATCTACACAATGA
AGAACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
AAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCT
AGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGA
AGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTGGGAAC
AAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGATGAA
AGGATGGACCATGTAGAGACTGCCATATCCAGGGATCCACCCCATAATCA
GCATCCAAACGCTGAAACCATTGCATACACTAGCAAGATTTTATCGAAAG
GACCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGAACCTAGCAAACC
CCAAAGTGGATGCTCACAGTCCGCTTATGGATGGATCCCAGGGCCCCCCG
TGGAAGAACTAGAAAAAATTCCCCAGGGACTTAAGGGTTCTGTCACCCCT
ATTGTGGACAAACATTTTGAAATTTCCCGTTACCCGGAAATTCTGTTTTC
CAATTGGCTTATATTTAAAAAAGGGGCTTATTCCCCTCCCTGGGAAAAAA
GACCCCTTGGTTTTTTTTATATTTATTTTCCCCCTCCTAGGGAAACCACG
TCCTAAATGTGAAAGTGGGGTCTCACTAACGTCCCTTTTTTTTCTCNTTC
TCTT
NNCCGAAGACGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACGCATTATGTTTTGTTATTCATTCAACATAC
ATTTGCACTATTTAAGAAATGTTTTATCCCCATTATTTATTTTGTATGTT
GTATATATGTGTAATCACACACATTTAAGGAAGCACACACAGAGGTCAAA
GGATGGTCTGTTAGCTCTTTGTACTATGTAGGCCCTGGTATAACAAAGCC
CTAAAAATTAGGAGACACCTTACTGGGAGTGAAGGTAGCTAGTTCCAAGA
ACACTGGGCCATGCTCCTAATAGAAAGAGATGGAGAGATTGTTCAGGTTT
TCTGCCTGACAGCCTTGTTCTTGCAAAGTGAATGACAAAGCTGACTCTGG
TTTCTTTATGAATGTGAGTGCACACACCATCACACATGCACACATACTTT
TTTTTTTTCCCCCCTCACCCTTAATCCTGATTACATTAAAAAAAAAAGAT
GAATGGTTATGACCTCAAAGAAATCCCCACAGAAAATACTCAAATGCCAT
ATTTTCTATGAATCACACACATCTAAGGGTGTGATTTTGTTTGCCAAAGA
TCTGTATGGGTCTTGGGAGCCACTGCATCTTAAATGTACTATGTTGAAAA
GGCTGGGGATGTAGCTCAGTTGGCAGAGTGCTTACTTAGCAGGAGGCCCT
GTATTCATAATTAGGACATGGTGTTACCCACCCGTAATCCCAGCACTCAT
GAAGTTAGGACAGGAAAATCAAGGGTTTGAGGCTAGCCTGGACTAAACAA
CCTGTCTCCAAACAAAATAAGAACTTGATAAAAGAAAGAAAGTTTGTGCA
AAAATAATGTGTTGTTTCACACTGGCTTACCTTTACACTGAAATCATTAG
AAAATTACTTGAAGTCCTTTGGTTCTAAAAATAAAGGTTTTTAAACATGG
TTTTAAAATTTTTTTTTAAATTGTACCCTATAAATATTTTCTAAAATTTG
TGATATCTGTTTCTGTTTATGTTATTGTTTTACTTTATATTATAAACCTG
CGGATAATCTCTTGTTATCTACAATTTCTTCTTTATTTTTCTTTAATTAT
AATTGTTTTTTATATCCCCTTGTTTTTCTTAATCTCTCTATTAATACTTG
TTTACTTATTATATAATACTTCTTCCTTTTATTTTCTTTTTCTATTTATA
TTATTCATAATTAATATATATCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_i08.g1 MSMg01no064_i08.g1 CHROMAT_FILE:
MSMg01no064_i08.g1 PHD_FILE: MSMg01no064_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:30 2005
         (152 letters)



>mm_chr9_112213281_112213832
          Length = 552

 Score =  255 bits (132), Expect = 7e-73
 Identities = 147/152 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggttatgacctcaaagaaatccccacagaaaatactcaaatgccatattttctatgaatc 60
           |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct: 201 ggttatgacctcaaagaaatccccacagaaaatactcagatgccttattttctatgcatc 260

                                                                       
Query: 61  acacacatctaagggtgtgattttgtttgccaaagatctgtatgggtcttgggagccact 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 acacacatctaagggtgtgattttgtttgccagagatctgtatgggtcttgggagccact 320

                                           
Query: 121 gcatcttaaatgtactatgttgaaaaggctgg 152
           |||||||| |||||||||||||||||||||||
Sbjct: 321 gcatcttagatgtactatgttgaaaaggctgg 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 552
Length adjustment: 8
Effective length of query: 144
Effective length of database: 544
Effective search space:    78336
Effective search space used:    78336
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)