BAC Information

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BAC

Clone NameMSMg01-064J23
Chromosome9 (Build37)
Map Location 60,508,692 - 60,509,098
singlet/doubletsinglet
Overlap geneLrrc49
Upstream genePkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4, LOC100039792, EG384942
Downstream geneLarp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10, LOC100040481, Tle3, LOC100039851
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064J23.T7 (MSMg01no064_j23.b1)MSMg01-064J23.TJ (MSMg01no064_j23.g1)
ACCAG290044AG290045
length1,227730
length of high quality
(start - end)
410 (43 - 452)---
definitionCHROMAT_FILE: MSMg01no064_j23.b1 PHD_FILE: MSMg01no064_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:41 2005CHROMAT_FILE: MSMg01no064_j23.g1 PHD_FILE: MSMg01no064_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGGACATTCGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCCTGCACAGAGCTCCATACAAGGCCTGCCTCCAATAACAATAGCTA
GATGCAGTACATTTCCTTTAAAATAGAGACCCCCCCAAGAATCCACCTGC
TCTTTTGCTTCAGCCTCATGCTAAAGGTTTTTCTAGCCCAGTGGAAAACA
GAGCCATCAAACTCAGAGTCTAGTGAGAGGCCTCCACTTGATGGCTCCTT
CTACACATCTTCACATGACAGAGGGGCAGCAGGCTTCCCTTCCCTGCCTC
TCAAACCTTTCACACTGGTAACAAGGCCTCAATATAAATTTTGGTGGGAG
ACAAGCATGCCAACATACAGTAAATATATAATGTTTAGTAGGAAACTGCT
ATTATTTGTTTAGGAAAAAAAACAACCACCAGTTGAAGTTTTGTCTTTTA
CTGTTTTTTGCCCCCCCCCCGCTGGCCTCCAAGATCTGAAAAAAAAAAAA
AGCCCGAGGGACCCTCAGTTAATTAACCCAGTTAATTCTGATTGGTGAAT
AAAGATGCCAGAAGCCAATAGTTGAGGAGAAGAGACATAGGAGGGGGTTA
GGTTTCCTGGGCTACAGACTGTGAGGAAGGAAGAGGAGAAGCGGTCTTGG
TAAATAGAATAGGTACAGGAAATAATGTGAGAGAGAATATTATAATAGAT
TTTTTTGTAAAATTAATATCCTTTTCTAACTTTATTTTTTAGTTTTTCTG
TCTCTTTGAAATTCTAATTTATTTTTCTTTTTTTTTTAATTTTATTTCTT
TCTATTTCTTTTTTTTTCTTACTTTCTCATTTTTTTCACTTTTATTCTAA
ATTATTATAATTTTTATATCTTTTTTCTCTCTAATTCTATTTTTTATTTA
TCTATTTATGTTTTCTTTTTCATTTTTTATTATTCTTCTATCTATCCTTT
ATCTTTTTCTTTTACTTCTTCCATCTTTTCTTCTTCCTCCTAATTATTTT
CCTACTTATCTATACCCTTTTCCCTTACTCTTTTTTCATTTGTCTTAATT
TATTCTTCCTCCTTTTTTCTCTATATTATTTTATATTCCTCTTTCCTTCC
TTACTTACTCTACTACTTTTTAATCTTTCTTCTTCNATCATCCATAACTT
TACTATTCTTCTTAATATATATTTATCTTATACATCCTCTGCACTCTTCT
ATCTCTTCCCTCCCATTTATATCTTTA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTCAAAAACAATGAGGTATTTTCCTCCCA
AACCGCATGAAATACCAAGGGGTCACTTGGCCCCAAAAACTCCACCCAGC
CAAGCCTCTCTTCTTCAGGGAAAATCCAGGTTGGAACTCAAACCTTGGCC
TTTTGGGTAACAAAGCAAGCACATTCTTTCTAGAAAAAGTCAGCAAAGGC
AAAGAAAATATAAAAGGAGGGAAACCTGAAAGGACTCTCCAAAATCACAC
AAGGGCCTCTCAATTCAGGAAACAGGTTACGGGCACCCCTGCAAAGGGTT
GCCCCAAATTTTTTTTTCCACCCCTACCCACACCCACGGTTAGGGGGGTT
TCCTAAGGACCCCCCCCCCCCCATGAATCTGCTGCCTGCAGACCGGAAAG
GCTATTCCCAAGCTTCCACTGGGGTCACTCTCAAAAGGTCCGGTCTTCAA
AGGTCTCCTCAACCCCTATGCCTGAGCAGGTTGCCCACAATTCCCCGTTA
CGAACCCTTCTAACTGGAACACGGAATCCTTCTTCAAATTGCAGCCACCT
CTGTCCTTACACTAATTCCACCCTTCCCTTCAGGATCCCTCAAACGATTA
CACACATCAAAGGTCCCAGTTCCCTGTCCCGAACCCAGGAAATGGACTTT
TAAATAGGAAACCTGCAAGCCCCGGGTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_j23.b1 MSMg01no064_j23.b1 CHROMAT_FILE:
MSMg01no064_j23.b1 PHD_FILE: MSMg01no064_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:41 2005
         (410 letters)



>mm_chr9_60508488_60509298
          Length = 811

 Score =  719 bits (372), Expect = 0.0
 Identities = 398/412 (96%), Gaps = 11/412 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcctgcacagagctccatacaaggcctgcctccaataacaatagctagatgca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcctgcacagagctccatacaaggcctgcctccaataacaatagctagatgca 264

                                                                       
Query: 65  gtacatttcctttaaaatagaga-----cccccccaagaatccacctgctcttttgcttc 119
           |||||||| ||||||||||||||     ||     |||||||||||||||||||||||||
Sbjct: 265 gtacattttctttaaaatagagaataatcc-----aagaatccacctgctcttttgcttc 319

                                                                       
Query: 120 agcctcatgctaaaggtttttctagcccagtggaaaacagagccatcaaactcagagtct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agcctcatgctaaaggtttttctagcccagtggaaaacagagccatcaaactcagagtct 379

                                                                       
Query: 180 agtgagaggcctccacttgatggctccttctacacatcttcacatgacagaggggcagca 239
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agtgagaggccttcacttgatggctccttctacacatcttcacatgacagaggggcagca 439

                                                                       
Query: 240 ggcttcccttccctgcctctcaaacctttcacactggtaacaaggcctcaatataaattt 299
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggctttccttccctgcctctcaaacctttcacactggtaacaaggcctcaatataaattt 499

                                                                       
Query: 300 tggtgggagacaagcatgccaacatacagtaaatatataatgtttagtaggaaactgcta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tggtgggagacaagcatgccaacatacagtaaatatataatgtttagtaggaaactgcta 559

                                                               
Query: 360 ttatttgtttaggaaaaaaaa-caaccaccagttgaagttttgtcttttact 410
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 560 ttatttgtttaggaaaaaaaaacaaccaccagttgaagttttgtcttttact 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 811
Length adjustment: 9
Effective length of query: 401
Effective length of database: 802
Effective search space:   321602
Effective search space used:   321602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)