BAC Information

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BAC

Clone NameMSMg01-065A09
Chromosome9 (Build37)
Map Location 27,308,165 - 27,308,380
singlet/doubletsinglet
Overlap genenone
Upstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b, Spata19
Downstream geneLOC666440, LOC100041202, Opcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065A09.T7 (MSMg01no065_a09.b1)MSMg01-065A09.TJ (MSMg01no065_a09.g1)
ACCAG290332AG290333
length692687
length of high quality
(start - end)
215 (60 - 274)214 (65 - 278)
definitionCHROMAT_FILE: MSMg01no065_a09.b1 PHD_FILE: MSMg01no065_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:24 2005CHROMAT_FILE: MSMg01no065_a09.g1 PHD_FILE: MSMg01no065_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATTTGCGGCGCTATACGACTCCTATTCCAAAGGACCACGGATTCAGTG
ATGTCCCCTGATTGGGAAGATAGCTACTCTAAAATTTCTGTATCCTCTAG
GGGTGGGGTCCCGCCTCATCTCAGTTCTCCAGACTCTGCAGGGAGCTGTC
AGACTGGGAAGACAACCTCCATGATCATTAAGCAATGGCTGGCTGCTGAG
CTTTCTTCACGCTTCACCTAGTGAGATAGATCCTTTGCTTGCGTAAGGAC
CCGAATTTAATCCCCATTACCCACGTATAAAGGTGAGGTACAACCTTGCC
TATAATCTCATTGTTGGTTATGTCAGGTAGGATTATAGACTAGAGGACCC
CTGTGTTGGCTGCCACTATAACTCCCGATTTAGTGAGACTCTGGAAGAAG
ATGGACACCCCCAACGACGGGCACTTAATATCCTTCTTCTGGCCTCCTTA
TGCATCATGGTTATAGTACATACCTTCAGCCTCACACTTATTGTTCATAT
TGCTGCACAATACTACATATGCATACCCCTACATATTCATATCCATATAT
ATTTAGAATGCACTAATACTAATAGCATATACATTCCTCCCAAAATCTCA
CACATACCTATTCACCCACATAACTTATCTTCTCCTCTCCCCATCCTTCC
TCTACCTCACCCTTTCTCCCTAACATATTAACCTAACCTACA
TGCAGTGTGAGGCCTGGTGGCCGCCTGTTCAAAAAATGGAGGTGAACTAT
AGAATTTCCGCGAAATTCACTCCTAGTCACTCCCAATCTCGGGGTGTAAT
AGTGGGGTGATGGGCAAGCAACGAACCAGGAGCTGTCACGCCATATCAGG
TGCTGAAACGTCATACTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGTT
TGGGATCTTCCTGAGAAGCAAGCAATAAAGCTTTTGCCGCGGAAGATTCT
GGTTTGTTGCGTCTTTCTTGCCGGTCGAGCGGTACGCATTAATGGTGTCA
TATGTTTGCAAGGTCTTGTGCCTCATTCTCTTCAGCTGGAAAGTAGGTGC
CAACAAACATGTATCTCTTATAACATTGTTGTAGAAAGCAGCTGCGTTGC
ATACAGGCCACGCCTTCATAAAACTGTCTTGCTCTCAGTTAGGGCCGTGT
TCTATTTGCTGTCAGCAGTCTTACATGACTCTCTTTGGAGCCACGGGAGT
TTCAGATTCTGTCCATACATTTGCAAGTTTTGTCTGGACGCCCCGACTGA
TGACGTTCCTCGGTTTCTCCTCTACCTCAATGTAGATGATTGTATCCCCA
TTTCATAGTTTTTGATTGGGATCAAGTGTCTTCAATATAATTATTTTTAT
CAACCCATACTCCTCTTCTGGCTCCTATCCTGTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_a09.b1 MSMg01no065_a09.b1 CHROMAT_FILE:
MSMg01no065_a09.b1 PHD_FILE: MSMg01no065_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:24 2005
         (215 letters)



>mm_chr9_27307965_27308580
          Length = 616

 Score =  387 bits (200), Expect = e-112
 Identities = 212/216 (98%), Gaps = 1/216 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattgggaag-atagctactctaaaatttctgtatcctctaggggtggggtcccgcctca 59
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gattgggaagtaaagctactctaaaatttctgtatcctctaggggtggggtcccgcctca 260

                                                                       
Query: 60  tctcagttctccagactctgcagggagctgtcagactgggaagacaacctccatgatcat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcagttctccagactctgcagggagctgtcagactgggaagacaacctccatgatcat 320

                                                                       
Query: 120 taagcaatggctggctgctgagctttcttcacgcttcacctagtgagatagatcctttgc 179
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 taagcaatggctggctgctgagctttcttcaagcttcacctagtgagatagatcctttgc 380

                                               
Query: 180 ttgcgtaaggacccgaatttaatccccattacccac 215
           ||| ||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtgtaaggacccgaatttaatccccattacccac 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 616
Length adjustment: 9
Effective length of query: 206
Effective length of database: 607
Effective search space:   125042
Effective search space used:   125042
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)