Query= MSMg01no065_o12.b1 MSMg01no065_o12.b1 CHROMAT_FILE:
MSMg01no065_o12.b1 PHD_FILE: MSMg01no065_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:32 2005
(280 letters)
>mm_chr9_123184083_123184760
Length = 678
Score = 487 bits (252), Expect = e-142
Identities = 271/278 (97%), Gaps = 2/278 (0%)
Strand = Plus / Plus
Query: 1 gactggcagcaagctccgaagatcttcctgtctccacttcttcagcactgggatcatagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gactggcagcaagctccgaagatcttcctgtctccacttcttcagcactgggatcatagg 260
Query: 61 catgtgccactatgcctgctttttgtgggattgaatgcaggtcctcatgcttgctcagaa 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacgtgccactatgcctgctttttgtgggattgaatgcaggtcctcatgcttgctcagaa 320
Query: 121 agcactttagctacagagccatctcccggtcctcacctataggtttaaatcacacagtgg 180
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 321 agcactttagctacagagccatctcctggtcctcatctataggtttaaatcacacagtgg 380
Query: 181 ttttgtgcaatttctactgatgtctggtaattataagtagtcctaaatactttttttttt 240
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 381 ttttgtgcaatttctactgatgtctgggaattataggtagtcctaaatactttttttttt 440
Query: 241 ttttagggttaagccattttagagcaaacttctctgaa 278
|| ||||||||||||||||||||||||||||||||||
Sbjct: 441 tt--agggttaagccattttagagcaaacttctctgaa 476
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 678
Length adjustment: 9
Effective length of query: 271
Effective length of database: 669
Effective search space: 181299
Effective search space used: 181299
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no065_o12.g1 MSMg01no065_o12.g1 CHROMAT_FILE:
MSMg01no065_o12.g1 PHD_FILE: MSMg01no065_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:32 2005
(333 letters)
>mm_chr9_123256779_123257510
Length = 732
Score = 611 bits (316), Expect = e-179
Identities = 331/340 (97%), Gaps = 8/340 (2%)
Strand = Plus / Minus
Query: 1 agaatggtgcaagtctttgagctcttaaaaacccacccccactgacatacctcctccagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 agaatggtgcaagtctttgagctcttaaaaacccacccccactgacatacctcctccagc 639
Query: 61 aaggccacacttcccaaacctacccaaacagggccaccaactggagaccaagcattcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 aaggccacacttcccaaacctacccaaacagggccaccaactggagaccaagcattcaaa 579
Query: 121 tacctgaccctaaggagtccattctcattcaaactaccatt-------ttccacattagt 173
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 578 tacctgaccctaaggagtccattctcattcaaactaccattggccattttccacattagt 519
Query: 174 acttgctgacctgtgggctaagcctgtcattcattggccaaaacctcaggatcacctcct 233
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 518 acttgctgacctgtgggctaagcctgtcattcattggccaaaaactcaggatcacctcct 459
Query: 234 ttgaaaggagatatggctgggggcttttctggaagttgttaccaaacacctgggctttga 293
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ttgaaaggagata-ggctgggggcttttctggaagttgttaccaaacacctgggctttga 400
Query: 294 gcatcctggagtgagagtcttattttcctaagagcccaat 333
||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gcatcctggagtgagagtcttattttcctaagagcccaat 360
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 732
Length adjustment: 9
Effective length of query: 324
Effective length of database: 723
Effective search space: 234252
Effective search space used: 234252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
