BAC Information

Click to search

BAC

Clone NameMSMg01-065P24
Chromosome9 (Build37)
Map Location 72,287,065 - 72,425,212
singlet/doubletdoublet
Overlap geneMns1, Tex9, 4930509E16Rik, Rfxdc2
Upstream geneGrinl1a, AA407270, LOC547043, LOC100040537, Cgnl1, Tcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, LOC666007
Downstream geneNedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081, Unc13c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065P24.T7 (MSMg01no065_p24.b1)MSMg01-065P24.TJ (MSMg01no065_p24.g1)
ACCAG291077AG291078
length705706
length of high quality
(start - end)
353 (63 - 415)191 (116 - 306)
definitionCHROMAT_FILE: MSMg01no065_p24.b1 PHD_FILE: MSMg01no065_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:39 2005CHROMAT_FILE: MSMg01no065_p24.g1 PHD_FILE: MSMg01no065_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,424,860 - 72,425,212)(72,287,065 - 72,287,255)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAAAATCCGCGGAATTCCAA
AAGGCTAACCAACAAAACAGTGACAAAAAGGTTATCTAATGAATCAAGGT
ACCAAACATCTAAAATGTTTTCTTTAAAATTTTCATACCTCGTAATTAGA
ACTTTAAAAATTACACATTTAATGAAATGTTTAAGTAATCTTTCAGTAAA
CGTCAGCAAGATTCAAAAACACAATTGCTTCCAACTGTGGTTTTAGGACT
GATGAGCTACACAAGAACATAGATAGTTAATAATGAAGGTACCCCGAGGG
TTGGTTGTAAATGTAAAATTTATTCACAAAAACTCAAGAGATATTTAGAA
TCAATATTTATTTAATAATGGCAGATTGTGAGGTATTGTACTTACCAAAA
TGCAGTCCACTTTAGATTGTACAGCTTTGCTAGAACAAAAATAAAAAGTG
AGAGTTAACAAAAAGTAGAGCATCTTTTAAGTATAAGAACTTCTCTTAAA
CAGACACAGTAAATATACAAACTAAGGAAACAGTGAAGCATCTCATTACA
TACTGCATTTTGTTACTATACCTACTAAAGTACAAATTGAAGCAAGGCAT
GTGAAACATTTATATATTTAACACAGTCTTAAAAAAATAATGAAAACTAA
ATTACCTTTCACAGAAAGCCTAATAGCCAAGTATATGCATCAAAACCTAG
TCATG
CATGGTGAGGCCTGGGGGCGCCTGGCTTCCTATCGGGGTGAACTATAGAA
GGTTACAAAGACAACTGTGTATTTCCCTTTCCCCCTCGCACTTGTAGGCG
ACCAAAATTAGAGCTTTGAGCTTTAGTGAAAAGCATCAGAAGTTAGTAGA
TGAAAAATTCCGCAAATCATTGAACATACAAGTCATGAATAAGTTAGAGA
GGCAAGCCAAGAACCAAGTGGTGCAAAATGAAAACGACGAGAAGGTGGAA
CGCCAGAGGTTCCTCAGAGTGCTGCAGAATGAGCAGTTTGAGCTCGACAT
GGAAGAATTTCTCTTTAAGTAAGTTGCAGTGTCCTTGTTAGTTTTCTTTC
CTTGGAAAAGGCGAAAGATGGCTGTCAGCCCTGCCTGGAGTTGAGGAAAT
ACAGAGAGCTGGGAACTGACTTTGGAGTCCTGGTTATTTTAGCTGAAGAA
CGTGGTGTCAGTTGGTCAGCTTGCATGCTTTTATCAACGAGCAAATCTAA
AGACTTTAGAATAGCATTTGGCTAGAGTATCCCTTTTTGTTTTTAAACAT
AAGCATGAAATCCGCAATTGTTAACATCACAGTTTTGTTTACGTGAGTGC
AACCGTGTTTGCCTCCTGCACATTTCTAATAGGAAATTTTATATATTCCT
TCTCTTCCCAAAAATTCAGGACTTTTAACATATACCCTAATAAAGTGGTA
GTGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_p24.b1 MSMg01no065_p24.b1 CHROMAT_FILE:
MSMg01no065_p24.b1 PHD_FILE: MSMg01no065_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:39 2005
         (353 letters)



>mm_chr9_72424660_72425412
          Length = 753

 Score =  675 bits (349), Expect = 0.0
 Identities = 352/353 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaacagtgacaaaaaggttatctaatgaatcaaggtaccaaacatctaaaatgttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 caaaacagtgacaaaaaggttatctaatgaatcaaggtaccaaacatctaaaatgttttc 494

                                                                       
Query: 61  tttaaaattttcatacctcgtaattagaactttaaaaattacacatttaatgaaatgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tttaaaattttcatacctcgtaattagaactttaaaaattacacatttaatgaaatgttt 434

                                                                       
Query: 121 aagtaatctttcagtaaacgtcagcaagattcaaaaacacaattgcttccaactgtggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aagtaatctttcagtaaacgtcagcaagattcaaaaacacaattgcttccaactgtggtt 374

                                                                       
Query: 181 ttaggactgatgagctacacaagaacatagatagttaataatgaaggtaccccgagggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttaggactgatgagctacacaagaacatagatagttaataatgaaggtaccccgagggtt 314

                                                                       
Query: 241 ggttgtaaatgtaaaatttattcacaaaaactcaagagatatttagaatcaatatttatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ggttgtaaatgtaaaatttattcacaaaaactcaagagatatttagaatcaatatttatt 254

                                                                
Query: 301 taataatggcagattgtgaggtattgtacttaccaaaatgcagtccactttag 353
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 taagaatggcagattgtgaggtattgtacttaccaaaatgcagtccactttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no065_p24.g1 MSMg01no065_p24.g1 CHROMAT_FILE:
MSMg01no065_p24.g1 PHD_FILE: MSMg01no065_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:39 2005
         (191 letters)



>mm_chr9_72286865_72287455
          Length = 591

 Score =  369 bits (191), Expect = e-107
 Identities = 191/191 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgagctttagtgaaaagcatcagaagttagtagatgaaaaattccgcaaatcattgaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgagctttagtgaaaagcatcagaagttagtagatgaaaaattccgcaaatcattgaac 260

                                                                       
Query: 61  atacaagtcatgaataagttagagaggcaagccaagaaccaagtggtgcaaaatgaaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacaagtcatgaataagttagagaggcaagccaagaaccaagtggtgcaaaatgaaaac 320

                                                                       
Query: 121 gacgagaaggtggaacgccagaggttcctcagagtgctgcagaatgagcagtttgagctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacgagaaggtggaacgccagaggttcctcagagtgctgcagaatgagcagtttgagctc 380

                      
Query: 181 gacatggaaga 191
           |||||||||||
Sbjct: 381 gacatggaaga 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)