BAC Information

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BAC

Clone NameMSMg01-066A08
Chromosome9 (Build37)
Map Location 112,700,233 - 112,700,666
singlet/doubletsinglet
Overlap genenone
Upstream gene4930545L08Rik, Arpp21, LOC100039341, LOC620760, LOC100043800
Downstream geneEG622110, LOC100039391, LOC100043801, LOC100043802, LOC636680, Pdcd6ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066A08.T7 (MSMg01no066_a08.b1)MSMg01-066A08.TJ (MSMg01no066_a08.g1)
ACCAG291093AG291094
length718699
length of high quality
(start - end)
444 (44 - 487)251 (76 - 326)
definitionCHROMAT_FILE: MSMg01no066_a08.b1 PHD_FILE: MSMg01no066_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:41 2005CHROMAT_FILE: MSMg01no066_a08.g1 PHD_FILE: MSMg01no066_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTCTAAGACTTTTCACTTTGGGAGCAGAAATCTATCTTCCCTCATA
CATTTCCATTGTTCTGCTAGTGCCACAAGCCTGTGGTTTCAATCAGCATG
CCGTTCACACTGAGCAGTGGACTGACTGCAGTTCAGTGGTACAGTCCCCA
TTCCCAGCCCTGTTTAGTATGAGTTTTGGCACCTGGATTAAGGAATCACT
ATTGTGCACTCTGGACTTAATTACGGGGCTCCAAAATGCCTATGTTTTGA
AGACTTAACCTCCAGTATGATAGATGGCTTCTGCGTCTTTAGAAGATGAC
TAGGGTCCTTTGAAGCTACAGGCGAATGGGCATTAATGCGAGTCATTTAG
GGTCATATAAAGGAGGAATATTCTTGCTCCTCCTTCTTTCCCTTCCTCCT
TCCATCTCTTTTATAAAGTGTGTGTGTTTACGTGCATGTGTGTTTGTGTG
TGTGTGTGTTTATGTGTGTGCGCATACTTGTATTATCGCACAAGCATCCA
TATGCAGCCCTCCTTATTTTTATTACCCTGATTCTCTCCACCAAATGATG
AATATGAACCCCCTTCTCTTAGCATGTCCTACTCATGTCTTCTGGCTATC
TATGTTACTCGTTTTCATTTCGAGGCATTACTTTTATTGGCTTTCACCTA
TTTCAAGTCCCTCTATTT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTG
AGAAGCACCTGAAAAAATGTTCAGCATCGATAATCATCAGGGAAATGCAA
ATCAAAACAACACTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGTTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAA
TTGTTCTGGCGGTTCCTCAGAATATTTTTATTAGTACTACTGGAGGATCC
TGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAGCTGGTAAGA
AAGACACATGCTCCACTATGTTCATAGTAGCCTTATTTATAATAACCAGA
AGCTTGAAAGAACCTAGATGCCCCTCAACAGAGGAATAGATACAGAAAAT
ATGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGATCTGGAGGGCATCATCCTGAGT
GAGGTCACCAAATCACAAAAGACCTCCCACGATATGTTCTCACTGATATG
TGGATATTAGTCCAGAAACTTATAACACCCCAGACATCAGATACTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_a08.b1 MSMg01no066_a08.b1 CHROMAT_FILE:
MSMg01no066_a08.b1 PHD_FILE: MSMg01no066_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:41 2005
         (444 letters)



>mm_chr9_112700029_112700869
          Length = 841

 Score =  772 bits (399), Expect = 0.0
 Identities = 427/437 (97%), Gaps = 3/437 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttctaagacttttcactttgggagcagaaatctatcttccctcatacatttcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gaattctttctaagacttttcactttgggagcagaaatctatcttccctcatacatttcc 579

                                                                       
Query: 65  attgttctgctagtgccacaagcctgtggtttcaatcagcatgccgttcacactgagcag 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 578 attgttctgctagtgccacaagcctgtggtttcaatcagcatgccgttcacactgaacag 519

                                                                       
Query: 125 tggactgactgcagttcagtggtacagtccccattcccagccctgtttagtatgagtttt 184
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tggactgactgcagtttagtggtacagtccccattcccagccctgtttagtatgagtttt 459

                                                                       
Query: 185 ggcacctggattaaggaatcactattgtgcactctggacttaattacggggctccaaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 458 ggcacctggattaaggaatcactattgtgcactctggacttaattacggagctccaaaat 399

                                                                       
Query: 245 gcctatgttttgaagacttaacctccagtatgatagatggcttctgcgtctttagaagat 304
           |||||||||  |||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 398 gcctatgtt--gaagacttaacctccagtatgatagatg-cttctgggtctttagaagat 342

                                                                       
Query: 305 gactagggtcctttgaagctacaggcgaatgggcattaatgcgagtcatttagggtcata 364
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 341 gactagggtcctttgaagctacaggcgaatgggcattaatgtgagtcatttagggtcata 282

                                                                       
Query: 365 taaaggaggaatattcttgctcctccttctttcccttcctccttccatctcttttataaa 424
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 281 taaaggaggaatattcttgctcttccttctttcccttcctccttccatctcttttataaa 222

                            
Query: 425 gtgtgtgtgtttacgtg 441
           |||||||| ||||||||
Sbjct: 221 gtgtgtgtctttacgtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 841
Length adjustment: 10
Effective length of query: 434
Effective length of database: 831
Effective search space:   360654
Effective search space used:   360654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)