BAC Information

Click to search

BAC

Clone NameMSMg01-066F05
Chromosome9 (Build37)
Map Location 113,009,717 - 113,010,231
singlet/doubletsinglet
Overlap genenone
Upstream geneArpp21, LOC100039341, LOC620760, LOC100043800, EG622110, LOC100039391
Downstream geneLOC100043801, LOC100043802, LOC636680, Pdcd6ip, Clasp2, Ubp1, Fbxl2, Susd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066F05.T7 (MSMg01no066_f05.b1)MSMg01-066F05.TJ (MSMg01no066_f05.g1)
ACCAG291324AG291325
length685685
length of high quality
(start - end)
594 (47 - 640)515 (77 - 591)
definitionCHROMAT_FILE: MSMg01no066_f05.b1 PHD_FILE: MSMg01no066_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:05 2005CHROMAT_FILE: MSMg01no066_f05.g1 PHD_FILE: MSMg01no066_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCATATCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGC
GGAATTCTTCTGGGAACCTTCTCTCAGAATCAATATAGAGAAGCTGTGTT
CTGGAGGTGGCCAAGGTTGTATCTCGCACTGGCAGCCAAACTTGGTAGTG
TAAGAGTCACCCAGGTGGTACTGATTTTGAAGGAATGAAGGGGTCATGGA
GAGTAGCTGAGGCTTGGCACTGGGAGAGGCTGGGAGAAGCTATTAGTGAA
CATGCAATCCCAGTAGCAGTTGAAGGCCCAGGATTAAAAGGGATAATCAT
GAAGAGGGTCCAAGAGAGACTAGTGGGCAAGCACAGCCCAGTTGGAGCCC
AGATCTCAGTATTTGGAGATACCACCATTATGGGATGACCACCAAGAACA
GCAGCAGCAGGGAAGTAGACCCAGATTGAGTTTAGAAGATAAGCAGTGGA
TGGCATAGAGATGGGAGCTGCAGAAGCGAGCCTTTTAGAGGAGCTCAGAA
GATCGTGAGTGAACTGCAGACAACGGACACTGAGTTATTTACACTACTGG
AGCTTGGTTTGCCTCAGTTCAGATTGTGACTGTGCCCTGCTTCTTCCTTC
TTGTCGTAAGAAAGTATGTAAGTTATTTTTGATTTTACAGAAGCCCACAG
TTGAGAGACTTCAAACTTAAAAAAAGATATTCTCA
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATAGAAGCAGCCCTGCCTATGCT
GTGCGATGCTGGCAATATTTTCCCTGATCCCTGAGGTCATCTTTCCTGTA
GGATGCTGTAGTCAAGCTTTAATTCCCCTCCCCTTTCATTTTTAATTAAA
GCCACCATTACCTATTGACTCTGCAAATTCTTCTGAAAGTGCCAGATGAG
ACAGAAGGTTCATTACATTCAAATCAATTCCCAGGCTGGCTATGCCTCTT
CCCAGGCAGTGGGCCAAGCCCCGTGGGTCTTCTGAAACTGAACAGAATGA
AGACCCTGAGTGTCAAACACTTCACCAGGTCCTGAGGCTGTCCAGAGGCC
TTGGCCATAGTTCTTGTGTCCCAGCAACGTCTCTAACTCTCCCTAGCCTA
CACTGCTCTCCCTACTGGAGAGACTGCATTCAAGTAGTCAGAAAGTGTCT
CTCAAGCAAGAATGATGTTGAACATGAAGCTCTCTAACACCTGGCCTAGA
TCTACACCATTCATAAACCCACAGAAAACTAAAGCTCATAGAAGACCTCA
AAATTACCAAGCCTCACATCCTCTTTTTCAGAATTGTATGATATAAAGAA
ATATTTCTGATGAGTCATTCGGAGGTATGAAGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_f05.g1 MSMg01no066_f05.g1 CHROMAT_FILE:
MSMg01no066_f05.g1 PHD_FILE: MSMg01no066_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:05 2005
         (515 letters)



>mm_chr9_113009517_113010431
          Length = 915

 Score =  949 bits (491), Expect = 0.0
 Identities = 509/515 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatagaagcagccctgcctatgctgtgcgatgctggcaatattttccctgatccctgagg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 aatagaagcagccctgcctatgctgtgcgatgctggcaatattttccccgatccctgagg 260

                                                                       
Query: 61  tcatctttcctgtaggatgctgtagtcaagctttaattcccctcccctttcatttttaat 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatctttcctgtaggacgctgtagtcaagctttaattcccctcccctttcatttttaat 320

                                                                       
Query: 121 taaagccaccattacctattgactctgcaaattcttctgaaagtgccagatgagacagaa 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 taaagccaccattacctattgactctgcaaattcttctgaaagtaccagatgagacagaa 380

                                                                       
Query: 181 ggttcattacattcaaatcaattcccaggctggctatgcctcttcccaggcagtgggcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttcattacattcaaatcaattcccaggctggctatgcctcttcccaggcagtgggcca 440

                                                                       
Query: 241 agccccgtgggtcttctgaaactgaacagaatgaagaccctgagtgtcaaacacttcacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agccccgtgggtcttctgaaactgaacagaatgaagaccctgagtgtcaaacacttcacc 500

                                                                       
Query: 301 aggtcctgaggctgtccagaggccttggccatagttcttgtgtcccagcaacgtctctaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggtcctgaggctgtccagaggccttggccatagttcttgtgtcccagcaacgtctctaa 560

                                                                       
Query: 361 ctctccctagcctacactgctctccctactggagagactgcattcaagtagtcagaaagt 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 ctctccctagcctacactgctctccctactggagagactgtattcaagtagtcagaaagt 620

                                                                       
Query: 421 gtctctcaagcaagaatgatgttgaacatgaagctctctaacacctggcctagatctaca 480
           |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtctttcaagcaagagtgatgttgaacatgaagctctctaacacctggcctagatctaca 680

                                              
Query: 481 ccattcataaacccacagaaaactaaagctcatag 515
           |||||||||||||||||||||||||||||||||||
Sbjct: 681 ccattcataaacccacagaaaactaaagctcatag 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)