BAC Information

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BAC

Clone NameMSMg01-066F16
Chromosome9 (Build37)
Map Location 91,887,454 - 91,887,911
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434428, LOC621576, Zic1, Zic4
Downstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066F16.T7 (MSMg01no066_f16.b1)MSMg01-066F16.TJ (MSMg01no066_f16.g1)
ACCAG291346AG291347
length674669
length of high quality
(start - end)
457 (56 - 512)418 (43 - 460)
definitionCHROMAT_FILE: MSMg01no066_f16.b1 PHD_FILE: MSMg01no066_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:07 2005CHROMAT_FILE: MSMg01no066_f16.g1 PHD_FILE: MSMg01no066_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCTTTGCTCTGGCTCTCGAACTGCGTGAAGAAGTTTGCTTTTCTC
CCATCTTTTTCTCATTTGCTTGCTTCTCATCTGCTTTGGTGTCTGACTGT
CTTTTAACACCTTCATTATGCCTCTCAACATCAGAGTGGATTTTTTTCTT
TTCTTCTAGTTATCATTTCTCTTTATTCACATTTTATTCCTGAGGGTTTT
TTTTGGGGGGGTATCTTTCCAGTTCCTTTTTTTAATTCTACTGGAGCCAT
TACTACTTGCCCTTGAATATTCAGAAAGGGCATGTTTTAGTTAAGGTTTA
AGATTTCATTGTGAAGTATCTTCTCCTTTACTCATTTCCCTTATATAATC
ACTCTATTAGGAACGTTTCATTAATTTTTTGTCATTTTCCTGTATACTCC
CTTCTCATAACTTTATAGTTTTTATACTAGACACTTTTGGATAATTGCTG
GCCAACTGTGTTATGGGAGATGGTGAAGACTTGAAAACTGATCAAGAAAA
GAACAACCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
ACTTTCACACCCCCATATTACTTCACTCTTTCACTCATTTATAACCTTGT
TCTTTTATTTTTATGGCGTTATCG
CCAATTTCCAGAGATGCGCGGAATTCTTTGTTCTTCCCTGAGCCCCATTT
TTTAATGGGGTTGTTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTAA
TAGTCACAAATAATATAAAATACCTTGGCGTGACTCTAACTAAGGAAGTG
AAAGATCTGTATGATAAGAACTTCAAGTCTCTAAAGAAAGAAATAAAAGA
AGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGAATTGGCAGGATCA
ACATTGTAAAAATGGCTATCTTGCCTAAAGCAATCTACAGATTCTATGCA
ATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTATAAAGGGCAAT
CAGCAGATTCATCTGGAATAACAAAAAACCGAGGATAGCAAAAACTCTTC
TCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCGGACCTAAAACTG
TACTACAGAGCAATTGTGATCAAAAGTGCATGGCACTGGTATAGTGACAG
ACATGTAGACCATTGTAACAGATTTGAAGACCCAGAGATGAATCCACACA
CCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGAAA
AAAGACAGCATTTTCCACAAATGGTGCTTGGACAACTGGCTGTTATCTTG
CACAAGAATGCGAATTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_f16.b1 MSMg01no066_f16.b1 CHROMAT_FILE:
MSMg01no066_f16.b1 PHD_FILE: MSMg01no066_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:07 2005
         (457 letters)



>mm_chr9_91887254_91888111
          Length = 858

 Score =  849 bits (439), Expect = 0.0
 Identities = 454/459 (98%), Gaps = 3/459 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttgctctggctctcgaactgcgtgaagaagtttgcttttctcccatctttttctcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tctttgctctggctctcgaactgcgtgaagaagtttgcttttctcccatctttttctcat 599

                                                                       
Query: 61  ttgcttgcttctcatctgctttggtgtctgactgtcttttaacaccttcattatgcctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgcttgcttctcatctgctttggtgtctgactgtcttttaacaccttcattatgcctct 539

                                                                       
Query: 121 caacatcagagtgga-tttttttcttttcttctagttatcatttctctttattcacattt 179
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 caacatcagagtggattttttttcttttcttctagttatcatttctctttattcacattt 479

                                                                       
Query: 180 tattcctgagggttttttttgggggg-gtatctttccagttcctttttttaattctactg 238
           |||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 478 tattcctgaggg-tttttttggggggcgtatctttccagttccttttttttattctactg 420

                                                                       
Query: 239 gagccattactacttgcccttgaatattcagaaagggcatgttttagttaaggtttaaga 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gagccattactacttgcccttgaatattcagaaagggcatgttttagttaaggtttaaga 360

                                                                       
Query: 299 tttcattgtgaagtatcttctcctttactcatttcccttatataatcactctattaggaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tttcattgtgaagtatcttctcctttactcatttcccttatataatcactctattaggaa 300

                                                                       
Query: 359 cgtttcattaattttttgtcattttcctgtatactcccttctcataactttatagttttt 418
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 299 cgtttcattaattttttgtcatttccctgtatactcccttctcataactttatagttttt 240

                                                  
Query: 419 atactagacacttttggataattgctggccaactgtgtt 457
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 atactagacacttttggataattgctggccaactgtgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 858
Length adjustment: 10
Effective length of query: 447
Effective length of database: 848
Effective search space:   379056
Effective search space used:   379056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)