BAC Information

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BAC

Clone NameMSMg01-066H18
Chromosome9 (Build37)
Map Location 121,443,182 - 121,443,483
singlet/doubletsinglet
Overlap genenone
Upstream geneEntpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1, Ulk4, Trak1, Cck
Downstream geneLyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066H18.T7 (MSMg01no066_h18.b1)MSMg01-066H18.TJ (MSMg01no066_h18.g1)
ACCAG291446AG291447
length783772
length of high quality
(start - end)
57 (127 - 183)300 (121 - 420)
definitionCHROMAT_FILE: MSMg01no066_h18.b1 PHD_FILE: MSMg01no066_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:17 2005CHROMAT_FILE: MSMg01no066_h18.g1 PHD_FILE: MSMg01no066_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTTTTTTCTTTTTTCTCCCCTCTCTCTTTTTCTTTTCANCCCCCCATA
TTTCCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGCTGGAGACTTCGAGAGCTCCC
TGACCATAGGTGTGGGTTGAGGCTTTGGAGGGGACCCGGGGACAGTGTGG
AGAAGGCTGGAGGGTAGAACAGGTGTGCTGCCTGGTTTCCTGTCAACTCG
ACACAAGCTGCTGTCTGCTTGGGAGAAGAAACCTCAATTGACAAAGTGTC
CCCACCAGTCTGGCCTGTGAGTAAGGCTGTAGGGCGTTTCCTGTATGGAT
GACTGATGGGGGAGGGCTCATGTCTTTTTAGCAGTGCCATCCCCAGGCAG
GTGGTGAAGGGCACTATCTTAACGCAGGCTGGGCAAGCCTTGATGAGTAA
ACCAGTAAGTAGCATTCTGTCATGGCCTCTGCTTCTGTTCCTGCCTCCAG
TTTCCTGCCTTGTCTTCTTTGTATGATGGACTGTGTACTTTGCTATGAAC
TGACCCTTTTCCCCCCAGTTGCTTTTGGCCATGGTGTTTTATCCCCGTGT
CCTTCACCTTTCTACTGGCTGTACAAAGTGCTTGCGAGTTTCTTCCTTCC
TGGGGTTTTTTTTTAATTTGGCTGTTCTCTTCCTTCTTTTTCACTCCGTT
GAGCCTCCGGCCCTTAATCGCTCTCTGGATTTTCCCATGGTTTTTATTCT
CCCCTCCCCTCTTTTGTACTCCTTCATCCCCCC
NTTTTNNNNNAAACCCNNNCCTTTTTTACCNNNNCACTTCCTCTATATAT
NCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATGGCGG
AATTCAGCCCACTGTGTCCAGCACCATTCCCTGGGCAGGAGGGCCAGGGA
TGTATAAGAAAGAAACTGGGTGTGAGCTTCCTTGAGCCAGTCAGCAAACA
GCTGACTGGTTACTACCAGTTCATCTAACCTGGTGGTTGCATGGTTCTTT
GGCTTCTGAGGTTCCTGGCCAGAGGTAATGCTGTGTAGAATAGCGTGAAG
GCCTTCCTTCAAGGTCCTGCCCTGGCTTCTTTCCATGATGGGCTGTGACC
TAGATCTGTAAGTGGAATAAGCCTGTTCCCCCCCCTCCCCCCAAGCCACT
TTTGTCCCCGAGTTTTATCAGAGCGACTGAATGGAAACTAAAACAGTCTT
CTCAGTGTGCTGGTCTTCTGTCCTCCTGTCAGAATTGTCCGTTAGGCGAT
TCCCCCATCTTTACTCAGCGTTTAGACGGCTTTAGTCTAAATCCCTCCTG
TAGACTATTTTACTCCCGGCCAGGTTTATATGCTTCAAGGTTTCTCGTTT
TGTTATGCCCTTGATTGAGACCTGACTCAGCTTGTCTGTCCCTACCCCTC
TGTATCTGTAATGCCCTGATCCAGGAGCTTGCCTTTATTGCAGGAGAACC
CACTGTTTACCATTATTCTAAATTCTACATTTTTCATTTCATGACCCTCT
CCTTGCCCCGCTTTGCCCTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_h18.g1 MSMg01no066_h18.g1 CHROMAT_FILE:
MSMg01no066_h18.g1 PHD_FILE: MSMg01no066_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:17 2005
         (300 letters)



>mm_chr9_121442982_121443682
          Length = 701

 Score =  545 bits (282), Expect = e-160
 Identities = 297/302 (98%), Gaps = 2/302 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaccattccctgggcaggagggccagggatgtataagaaaga-aactgggtgtgagctt 59
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 gcaccattccctgggcaggagggccagggatgtataagaaagataactgggtgtgagctt 260

                                                                       
Query: 60  ccttgagccagtcagcaaacagctgactggttactaccagttcatctaacctggtggttg 119
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ccttgagccagtcagcaaacagctgactggttactaccagtccatctaacctggtggttg 320

                                                                       
Query: 120 catggttctttggcttctgaggttcctggccagaggtaatgctgtgtagaatagcgtgaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catggttctttggcttctgaggttcctggccagaggtaatgctgtgtagaatagcgtgaa 380

                                                                       
Query: 180 ggccttccttcaaggtcctgccctggcttctttccatgatgggctgtgacctagatctgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggccttccttcaaggtcctgccctggcttctttccatgatgggctgtgacctagatctgt 440

                                                                       
Query: 240 aagtggaataagcctgttcccccccctcccccc-aagccacttttgtccccgagttttat 298
           ||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 441 aagtggaataagcctgtcccccccccccccccccaagccacttttgtccccgagttttat 500

             
Query: 299 ca 300
           ||
Sbjct: 501 ca 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 701
Length adjustment: 9
Effective length of query: 291
Effective length of database: 692
Effective search space:   201372
Effective search space used:   201372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)