BAC Information

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BAC

Clone NameMSMg01-067C18
Chromosome9 (Build37)
Map Location 10,736,851 - 10,737,165
singlet/doubletsinglet
Overlap geneLOC665178
Upstream geneCntn5, LOC665154, LOC100039970
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067C18.T7 (MSMg01no067_c18.b1)MSMg01-067C18.TJ (MSMg01no067_c18.g1)
ACCAG291973AG291974
length709707
length of high quality
(start - end)
311 (42 - 352)234 (70 - 303)
definitionCHROMAT_FILE: MSMg01no067_c18.b1 PHD_FILE: MSMg01no067_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:12 2005CHROMAT_FILE: MSMg01no067_c18.g1 PHD_FILE: MSMg01no067_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTATACTATACCTATCTAAATATTTATATATTTATATTATATATAATATA
CTTATATATGTATATTTATCTTGTAATATCTTTACAAATAAGATGCAAGG
TAAACTCTTTGAAAAGAATGGGTTAATTTTATATTAGAGTCACTGTTTTT
CTGTAATGCATAGGGCATGCACTTGTGTACATACACTACACCACACTCAC
ACACACACACACACTTTCCTTTTAGCTTCTTACCCAGGATTCCACTGTTG
TGACTGCTTGTCTGCATTGCTGTTTGTACACTGGGTGATAAAGTAGGAGC
TCCTAGTTATTCACGCTCCTCCCCCACGCATATTTAATCATTAATGAAAT
AATAACAGTAACAATAAATAAAACTTCTAGAGTGTTCTATAATGGCCATA
GGATTCATTATAGGAAGATAGTTAAATTGTACTAGACTAAGCTTGAGAAA
ATAGGAGCATTGTACGTCATTTTTCATGTGGCCTAACAAATCTACAAATG
TCATCCTGATTCATATTTGTGCCTAGACACTGCAGCTCATGTGGAATATG
TAAACACCTGTCATATTGTTGTACTCTTATGCTCATTCTACCATCTTAAA
TATTACTCATTTCATTATCTTGCATTTAGCTCATTGTAACCTTCCTTTAA
TTTTCTCCC
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTGTCTTAATTCTGCTTAATATTGCTGGGAT
GAAACACCATGACCAAAAGCAACTTGGTGAATAAAAGGATTTAATTCACT
TACACTTCTAGGTAACTGTGTGAAGTCAGGACAAGAACTTGAACAGGATA
GGAACCTGCAGGCAGGAGCCATGAAGGGGTCCTGCTTTTTGGCTTTCTCA
TCTTATTTTGTACAGCCTGCTCTTTCATAGAACACCACTCAACAAGCCCA
GGGTTGGTATCTTATGTAATGGGCTGGACCCTCCCCAATAAATTACTAAT
TATACTATTGGCTCACAGGATTGCTTACAACCCAATCTTATGCAGTCATT
TTCTCAGCTGAGGCTCTCTTCTCTCATGTAATTCTAGCTTGTGTCAATTC
GACATAAAACTATCCAGCACATAATTTTATGCAACCTGAAACTATATACA
TTTTATGTTTTAGATCGAACCTCATAAAAGCCAAACCTGTCCTTATATCT
TCTTACATCTGTTGAAAATATTTGTTCTCCACAACCTGATATTCCCAATA
TTTCAGTATATAAATGTATAGAAATAATGACTTTTCTACCATGTGTTTTT
TCAATCTTAAAAAACATTCACTTAAATTTTGTACCTATTATTTTCTCTTC
TCTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_c18.b1 MSMg01no067_c18.b1 CHROMAT_FILE:
MSMg01no067_c18.b1 PHD_FILE: MSMg01no067_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:12 2005
         (311 letters)



>mm_chr9_10736641_10737351
          Length = 711

 Score =  420 bits (217), Expect = e-122
 Identities = 286/323 (88%), Gaps = 24/323 (7%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatactatacctatctaaatatttatatatttatattatatataatatact--t 62
           ||||||||||||||||        |||| | |||||||||||||||||||||||| |  |
Sbjct: 211 gaattctatactatac--------atatctctatatttatattatatataatatatttat 262

                                                                       
Query: 63  atatatgtatatttatcttgtaatatctttacaaataagatgcaaggtaaactctttgaa 122
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 263 atatatttatatttatcttgtaatatctttacaaataagatgcaaggtaaactctttgag 322

                                                                       
Query: 123 aagaatgggttaattttatattagagtcactgtttttctgtaatgcatagggcatgcact 182
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 323 aagaatgggttaattttatattagagtcactgtttttctgtaatgcatagggcatggact 382

                                                                       
Query: 183 tgtgtacatacactacaccacactcacacacacacacacac--------------tttcc 228
           ||||||||||||||||||||||| |||||||||||||||||              |||||
Sbjct: 383 tgtgtacatacactacaccacacacacacacacacacacacatgtgcacacacactttcc 442

                                                                       
Query: 229 ttttagcttcttacccaggattccactgttgtgactgcttgtctgcattgctgtttgtac 288
           |||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||| 
Sbjct: 443 ttttagcttcttacccaggattccactgttgtgacttcttgtctgcagtgctctttgtat 502

                                  
Query: 289 actgggtgataaagtaggagctc 311
           | |||||||||||| ||||||||
Sbjct: 503 attgggtgataaagaaggagctc 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)