BAC Information

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BAC

Clone NameMSMg01-067F03
Chromosome9 (Build37)
Map Location 18,833,505 - 18,833,608
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834
Downstream geneOlfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067F03.T7 (MSMg01no067_f03.b1)MSMg01-067F03.TJ (MSMg01no067_f03.g1)
ACCAG292084AG292085
length762731
length of high quality
(start - end)
104 (135 - 238)34 (156 - 189)
definitionCHROMAT_FILE: MSMg01no067_f03.b1 PHD_FILE: MSMg01no067_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:23 2005CHROMAT_FILE: MSMg01no067_f03.g1 PHD_FILE: MSMg01no067_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGT
AATTCTGTAACTTCTCTGAACTCAGTTTCATGTAATTGACAAATCATATT
GAAGTAAAGTATGAATATAACATCCAATGGATAGTTTCTATATAAATCAA
TGTTTTCCCAATAATGATCACAATGAAACATTCACACCTGACTCAAATAT
AGGCCAGATATGTCTGTATTACGCGCTATTCTCAGGCATGTTCATCAGTC
CCAAAGAACAGAGCAGAAGAATTCACATGTCTCATCTAAGAGAAGTGAAT
ATTTGTGTGTGTGTGGGGTGTTTAGATAATAGCCCATCACAAAAGACTCA
TCAACAAAAAATTTTTTTTTTCCCCCCCCCCCCCCCCCAATCATATATTC
TCACCCCCTATTTATACTCCTCCCTATCTGCCATAAAAAAATATACTCCT
CGAGCCGCAGCACCCCCACCAATAATCCCATCCCACCTCCATCTCTATAA
ATTAAATCTCTTATTTTATATTACAATCACAGCAACTTATTTTATATATC
TCCACTTCAACAATTCAATTTACCTATCCAACTCCTTCCCCTCTCCTTCT
ACCACTCTTCCATTTATTTATACCCTCTTCCCTCTTCTTTCTCCTCCCCA
TCCCCTTCCACTTTTATTTCCCTCCTTCCTCTCCTCACTACTACCCTCAA
ATCGCATTAATATTTCTATTCAAACATACCATTATTAATCACTCCACACC
CCCAACATTCAN
AGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATTCTCACCATCCTTAATCATCAGAGAAATGCAAA
TCAAAAGAACCCTGAGATTTCATCTCACACCAGTCAGAATGTCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCACTGCTGTAGGGATTGCAAGCTTGTACAACCACTCTGGAAAT
CAGTCTGGTGTTTCCTCATATATTTGGACATAGTATTACCAGAGGATCCA
GCAATACTTTTTTTTTTTTTCCCCCCCCCCCCCCTCCCAATTGTCAAGAA
TGACACGTGCTCTACTATGTTCATAAAAACAAAAAATATACTAGCCAGAG
TGGGGAACGAATCCTTATGCCCCTCTATATACCAACGCATTTTAACCATG
TGTAACTTTTTCCTAAGGCCATCTTTATTTCCCCTACTACTCATACTGAA
CTCTATGATATTTTTCTACCTATACGCCTTTTACCTGCCACTTTCTCTTT
CTTGACTGTATGTTATCCCACTCCCCTATGTTTATTCCTTCTGATACCGC
TACCCTTTTGTGACATTCATTTCCACCTTTATTAACCTTATCCCCCTTTT
TATACTTTCTCCCCCTTTTTTGTTCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_f03.b1 MSMg01no067_f03.b1 CHROMAT_FILE:
MSMg01no067_f03.b1 PHD_FILE: MSMg01no067_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:23 2005
         (104 letters)



>mm_chr9_18833305_18833808
          Length = 504

 Score =  178 bits (92), Expect = 8e-50
 Identities = 101/104 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctatataaatcaatgttttcccaataatgatcacaatgaaacattcacacctgactc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 304 tttctatataaatcaatgttttcccaataatgatcacaatgaaacattcaaacctgactc 245

                                                       
Query: 61  aaatataggccagatatgtctgtattacgcgctattctcaggca 104
           ||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 244 aaatataggccagatatgtctgtattaggtgctattctcaggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 104
Length of database: 504
Length adjustment: 8
Effective length of query: 96
Effective length of database: 496
Effective search space:    47616
Effective search space used:    47616
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)