BAC Information

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BAC

Clone NameMSMg01-067I07
Chromosome9 (Build37)
Map Location 89,056,390 - 89,056,569
singlet/doubletsinglet
Overlap gene4930579C12Rik
Upstream geneEG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714
Downstream geneBcl2a1b, Mthfs, AF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067I07.T7 (MSMg01no067_i07.b1)MSMg01-067I07.TJ (MSMg01no067_i07.g1)
ACCAG292234AG292235
length714734
length of high quality
(start - end)
180 (122 - 301)187 (71 - 257)
definitionCHROMAT_FILE: MSMg01no067_i07.b1 PHD_FILE: MSMg01no067_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:38 2005CHROMAT_FILE: MSMg01no067_i07.g1 PHD_FILE: MSMg01no067_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:38 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGNTACGCGGAATTC
NTAGGGGTTTCGCAAATAAACTGTGTGGCTCTTTGTGCCCATTCTGATGT
TATCTAGNCTGCTAAACCCTTTCTCCAGAGCTTACTGGAGAATCCTCGTT
GGGACATAGCCACCCCCACTTTTCCATGTACAGAATTTAATTTCCAGGCT
CGGTCACCTGAAAAGCAGCGTGTGCTTCTCTACCTTCCAGAGCTGTGCCT
GTCGGCTGCCTGCTGAATGACACACTACCATGGGCTTCTGACTTCTGCAG
CAGCCAGTGTATATTCTCTTTGCCCTATCATTTTGCCTCGTGGTAAGGCA
CATGTTTTTTTTTTACCCCCTCCCCCGCTGAGTCATAAGTGGCCCTTGAT
ATGTACATCTATGTTATCTCAAATAAAAACCCTGATCTCAGGTTCTCTCG
TCTTAGAAGGATCCCCNGTCTACTGCCTGTTCTGGCATGTCCACGTAAGA
ACCTTGAACCATACCTTCGCAGCTCTCCTGTGTCTATGATTTNTAAGNTT
ATAACCCCCCCACCAATACGCGGCCTTGTTCCATTGGGCTCCTTTTTTCG
GTGGCAATATTAATTTAATACTGTCTTTTATTGATTATTGCAACCCGCTT
CAATATTACGTTTTCCCCGACGGCACCCCGGTATCCTTTTTTAACCCAGA
GCAATTATTTCAAG
ATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTAAGAACGTTACCTATTCAGTAAAATTC
AAATTTACCTCTAGTAGAGACCGTGAAAATAATCAGGTAGTAAAATTTAC
TTGAATAAGAGCTAGAAAGCTCAGGGCTAGTCTACATAGTAATTACTTAG
AAGAATAACCAAGTCACACCCATACACATGAATACACACTGGGCCTAGGA
AATAGGTGGGTTGTGGTAGTATTATTCCTGAAAGGGTTAGCAGAAAGAAA
TTCCCCTGGTGCAGGTTTTTCTCTAGGCCCAGAGGACTAGCATACTCAGG
CATTTCTTTTTTTTTTTCTGCCCCCCCCCCTCAACATAGACTAGCATTGT
ATCTGAGCTTTTCCCTGCCTCCTGAGAAACAAAAGACCTTAATGGGGGGG
ATGTTCTATTCTCATGTGGCACACTTGTGCCTGACTCCCTTCACTCTTCA
TATGTATTGCACTCTCCACTTGCTCATGTGGCACACGTTCCTATGCAGCT
ATATCCCCCGCACCCATTTTCATTTTCCATTTTTTTTTTAGCCTTACCCC
TGGGCTCCCCGTTTTGATTTAAATTAATTTCCTCCACACCCCTTTTCTAG
GTACCCTCATTACACCGCTTTAAATTTTATTCTTCTTTATTACGCCCACA
CCCCCCCCTTACATTCGATATTACGTACCACACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_i07.b1 MSMg01no067_i07.b1 CHROMAT_FILE:
MSMg01no067_i07.b1 PHD_FILE: MSMg01no067_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:38 2005
         (180 letters)



>mm_chr9_89056190_89056769
          Length = 580

 Score =  340 bits (176), Expect = 2e-98
 Identities = 179/180 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctccagagcttactggagaatcctcgttgggacatagccacccccacttttccatgtac 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 tctccagagcttactggagaatccccgttgggacatagccacccccacttttccatgtac 260

                                                                       
Query: 61  agaatttaatttccaggctcggtcacctgaaaagcagcgtgtgcttctctaccttccaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaatttaatttccaggctcggtcacctgaaaagcagcgtgtgcttctctaccttccaga 320

                                                                       
Query: 121 gctgtgcctgtcggctgcctgctgaatgacacactaccatgggcttctgacttctgcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgtgcctgtcggctgcctgctgaatgacacactaccatgggcttctgacttctgcagc 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space:    98384
Effective search space used:    98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)