Query= MSMg01no067_p03.b1 MSMg01no067_p03.b1 CHROMAT_FILE:
MSMg01no067_p03.b1 PHD_FILE: MSMg01no067_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:12 2005
(645 letters)
>mm_chr9_65686212_65687256
Length = 1045
Score = 1220 bits (631), Expect = 0.0
Identities = 637/639 (99%)
Strand = Plus / Plus
Query: 7 ggaattcactgatcatcttgtgaaaaccaacaccagagtctctgttcaaggacccaggct 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattcactgatcatcttgtgaaaaccaacaccagagtctctgttcaaggacccaggct 266
Query: 67 ccagctgtggctacttatcacataagggtttttatataggaaaaataaagtgaattaaat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ccagctgtggctacttatcacataagggtttttatataggaaaaataaagtgaattaaat 326
Query: 127 ctgtttaaaactgggctggagagatggctcaacagttaagagcactgactgctcttctag 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctgtttaaaactgggctggagagatggctcaacagttaagagcactgactgctcttctag 386
Query: 187 aggtcagttcccagcaaccacatggtggctcacaaccatctgtaatggggtctgatgccc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aggtcagttcccagcaaccacatggtggctcacaaccatctgtaatggggtctgatgccc 446
Query: 247 tcttctgatgtgtctgaagagagtgacagtgtactcataaacataaaataaataaatcct 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcttctgatgtgtctgaagagagtgacagtgtactcataaacataaaataaataaatcct 506
Query: 307 taaaaagaaaggatgattacttacagattttaggatttcctttaatagggaacttcacaa 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 taaaaagaaaggatgattacttacagattttaggatttcctttaatagggaacttcacaa 566
Query: 367 ccatttcctggggatttttgcagatgaaaacaaatgaagagtcagactcttgactgatgt 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ccatttcctggggatttttgcagatgaaaacaaatgaagagtcagactcttgactgatgt 626
Query: 427 ctgggaactaaaagaaaaaattcaggctagttgggacaaatctgtcattttattttattt 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ctgggaactaaaagaaaaaattcaggctagttgggacaaatctgtcattttattttattt 686
Query: 487 ttatttttgtttttcttttgagacagggtttctctgtatagccctggctgtcctggaact 546
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ttatttttatttttattttgagacagggtttctctgtatagccctggctgtcctggaact 746
Query: 547 cactctgtagaccaggctggcctggaactcagaaatccacctgcctctgcctccccagtg 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 cactctgtagaccaggctggcctggaactcagaaatccacctgcctctgcctccccagtg 806
Query: 607 ctgggattaaaggcgtgcgccaccactgcctggctcttt 645
|||||||||||||||||||||||||||||||||||||||
Sbjct: 807 ctgggattaaaggcgtgcgccaccactgcctggctcttt 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no067_p03.g1 MSMg01no067_p03.g1 CHROMAT_FILE:
MSMg01no067_p03.g1 PHD_FILE: MSMg01no067_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:12 2005
(573 letters)
>mm_chr9_65704268_65705240
Length = 973
Score = 1046 bits (541), Expect = 0.0
Identities = 567/579 (97%), Gaps = 7/579 (1%)
Strand = Plus / Minus
Query: 1 caggaaggctttgatggcggctggtgcctgtctatgcatcagccctgggcttctctgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 caggaaggctttgatggcggctggtgcctgtctatgcatcagccctgggcttctctgctt 881
Query: 61 gtcagggggattaaaaggtaagaattgagagtcaaagtcttagagtgatatataattgat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 880 gtcagggggattaaaaggtaagaattgagagtcaaagtcttagagtgatatacaattgat 821
Query: 121 ttagacttatggattgctgctcatttgtaccagtccactggtaacatggtattgttcagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 ttagacttatggattgctgctcatttgtaccagtccactggtaacatggtattgttcagt 761
Query: 181 gtatataatttaaacagggccagggatggtggtgcaaacctgtaatcaaaactcttggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gtatataatttaaacagggccagggatggtggtgcaaacctgtaatcaaaactcttggca 701
Query: 241 ggtagaggcaggaggattgtgagttgtagtccagcttggtgtacattattaaaatttatc 300
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 700 ggtagaggcaggaggattgtgagttgtagtccagcttggtgtacattagcaaaatttatc 641
Query: 301 tcaacaaagaaaagagctgtaaagttggctcaggtggcaaaagtactttctatgcacgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tcaacaaagaaaagagctgtaaagttggctcaggtggcaaaagtactttctatgcacgcc 581
Query: 361 tgatgggcggagctcactaaggagagagccagctcctgaaggtatcctctaaccgcgagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tgatgggcggagctcactaaggagagagccagctcctgaaggtatcctctaaccgcgagc 521
Query: 421 gcgtgtgtgcg------cacacacacacacacacacacacacacacacacagagttaaga 474
||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 520 gcgtgtgcgcgcacacacacacacacacacacacacacacacacacacacagag-taaga 462
Query: 475 aaagacagttaaaacaaacacgtgtatttaaaaacttacttagtgatagagagatggatc 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aaagacagttaaaacaaacacgtgtatttaaaaacttacttagtgatagagagatggatc 402
Query: 535 agcagttaagaacagttcttgcccttgtagagcaactag 573
||||||||||||||||||||||||||||||||| |||||
Sbjct: 401 agcagttaagaacagttcttgcccttgtagagccactag 363
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
