BAC Information

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BAC

Clone NameMSMg01-068E15
Chromosome9 (Build37)
Map Location 24,450,813 - 24,451,120
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040866, LOC100040878, LOC100040893, Npsr1, Dpy19l1, Cypt4
Downstream geneTbx20, LOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068E15.T7 (MSMg01no068_e15.b1)MSMg01-068E15.TJ (MSMg01no068_e15.g1)
ACCAG292818AG292819
length717761
length of high quality
(start - end)
315 (45 - 359)286 (78 - 363)
definitionCHROMAT_FILE: MSMg01no068_e15.b1 PHD_FILE: MSMg01no068_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:40 2005CHROMAT_FILE: MSMg01no068_e15.g1 PHD_FILE: MSMg01no068_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCCAAATATCATTGTCAGAAGTAGCAATTCCCATTATTTCCTGTGA
CTTATCTTCTTAGGTCTTAATTGCCTTGCTACAAAACAATAGCAGCAATA
ATAAAAACCTATGGATACCATGCATTTATGTATGCCTATACTTTTCTATG
TTTTCCCCACTGAAAAGTTAGATAAACTCTTTTTGCTCTCATCATAAGAA
ATAAACGTGTTCCCTTGTATTTCTTGTTTTAAATGAATAGTGAACTGTAT
GTTTTCAACAATTTTTTTCACATTTGTGTTTTTGTATTTTTGTTCCAGAT
AGCCTCATTATTTTTTTTGTCCCCCCCCCCACACATTGAGCCAAGCAAAT
TTCATAAGATCATTTATGCCCATATAGAAAAAATTTTTAATATTACGAGT
CTAATATCACAATATCTTAATTTGTAAAGCATAACTACTTCTGCCTTATG
GGCCACTTGCTTTTTGATGGCACTTTAGGCACAAGATATCTTAAGCACCA
TGTCACGCTGTGCTGTCCTGAGTCTTTGCTGGCAACCATACAGTAGATGG
ACTGTCCTGAAAAAGTGCTTATTTTTTGTTTGAGAGCGATATGAATTGCT
GTCGCAATCATTTAATCCCTTTTTGTTGTGTGCAGCCCCCCTATATTGTT
TAACAATGTTTTCTTAG
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTTCCACAAACTTCAAAGCCT
TGATAGGTTTGATCCCTTTCATTTGTTCCCTCTTTGGGATTGGGGAAAAC
ATTCTATTTTTAATAGGAAAAGAGAGCAGGGTCCCCAATAGAGGAGTTAG
AGAAAGAACTGAAGGAGTTGAAGGGGTTTGCAACCCCATAGGAAGAACAA
CAGTATCAACCAACCATACCCTCTAGAGCACCCAGGGACTAAGCCATCAA
CCAAGGAGTACACATGGCTCCAGTTGTTTAGGTAGCAGAGAATGGCCTTG
TCAGGCATCAATGTGTGATTAGCNNTTGCTNNCCTGAAGGCTCGATAGAT
ACCCCAGTATAAGAGAATCCCGAGCAAAAAAAAAGAAAATAGGTGGGTGG
GGGGGGTCTTCTCCTCCCACTTATCCGTTCTGCTTCGTTTTTGAGTTGTC
GTCGGTCTCTGTTTTGTGTTCGTAATTATTTATATTTTTTTTCCTTGGCC
CTCGCATGCTTTGTTCTTTTCCTTTTTGCGTTTTCCCCCCTTTTGCCCCC
TTCTTCTTTGTTTCTCTTTGGGGATCGCCTTATTATTTTGCCTTGATTGT
TTATGTCCTCCCTCGTCTTTCTTTTCCTTTTACCTCCTTATGCATTGATC
TTTGTCACTTTCTCCCCCTTATTCTTTTTCTTTACTGCCCCGTATTCTCT
TATTCTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_e15.b1 MSMg01no068_e15.b1 CHROMAT_FILE:
MSMg01no068_e15.b1 PHD_FILE: MSMg01no068_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:40 2005
         (315 letters)



>mm_chr9_24450610_24451320
          Length = 711

 Score =  551 bits (285), Expect = e-161
 Identities = 305/313 (97%), Gaps = 6/313 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccccaaatatcattgtcagaagtagcaattcccattatttcctgtgacttatct 63
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 511 ggaattccccaaatatcattgtcagaagtagcaatttccattatttcctgtgacttatct 452

                                                                       
Query: 64  tcttaggtcttaattgccttgctacaaaacaatagcagcaataataaaaacctatggata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tcttaggtcttaattgccttgctacaaaacaatagcagcaataataaaaacctatggata 392

                                                                       
Query: 124 ccatgcatttatgtatgcctatacttttctatgttttccccactgaaaagttagataaac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ccatgcatttatgtatgcctatacttttctatgttttccccactgaaaagttagataaac 332

                                                                       
Query: 184 tctttttgctctcatcataagaaataaacgtgttcccttgtatttcttgttttaaatgaa 243
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tctttttgctctcat---aagaaataaacgtgttcccttgtatttcttgttttaaatgaa 275

                                                                       
Query: 244 tagtgaactgtatgttttcaacaatttttttcacatttgtg-tttttgtatttttgttcc 302
           |||||||||||||||||||||||||||||| |||| ||| | ||||||||||||||||||
Sbjct: 274 tagtgaactgtatgttttcaacaatttttt-cacagttg-gatttttgtatttttgttcc 217

                        
Query: 303 agatagcctcatt 315
           |||||||||||||
Sbjct: 216 agatagcctcatt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 711
Length adjustment: 9
Effective length of query: 306
Effective length of database: 702
Effective search space:   214812
Effective search space used:   214812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)