BAC Information

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BAC

Clone NameMSMg01-068G08
Chromosome9 (Build37)
Map Location 87,433,500 - 87,433,635
singlet/doubletsinglet
Overlap genenone
Upstream genePgm3, Rwdd2, Mod1, Prss35, Snap91, C030002E08Rik, Cyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706
Downstream geneTbx18, LOC671731, LOC100039580, LOC384962, EG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068G08.T7 (MSMg01no068_g08.b1)MSMg01-068G08.TJ (MSMg01no068_g08.g1)
ACCAG292900AG292901
length797795
length of high quality
(start - end)
140 (194 - 333)97 (143 - 239)
definitionCHROMAT_FILE: MSMg01no068_g08.b1 PHD_FILE: MSMg01no068_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:49 2005CHROMAT_FILE: MSMg01no068_g08.g1 PHD_FILE: MSMg01no068_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCCCCCCTCTTTTTCTCCCCCTTTTTTTTTTTTTTTTTTTCCCTCC
TTACTGCCTNCNGTTTTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXTTT
CAGAAGATGGCGGAATTCCCTAGGATTCCCATAATATTTTGAATCTTGGC
TTCCTAGTAGTTCTCTGTGTCACAGTAAACATCATTTGGCCAGTATGTTT
TTTTTTCTACTTTCAAAAACTCTCAGACTTCTCCTGTTATGGAGATGAGT
TTGTGTGAAGCTTGGGGAACGTTTTCAAATGTATGCAAAACCTTGCTCCA
ATTAGCACTTTCTGAATGCCATCTAACACATGCACCAGCCTTCTAAAGCT
TCATAGTGTCTTTATGGTGACTTTCTCTGGACCGTTCTATTAAAATTCCA
GCTGTTCTGTCGCTTGGTTTCTATTATATAATTACTATTCTCCTCTTAAC
TGCTTATTATCTAATCTCTATTGTTTTTGATAGCGCCTTAAAATATGAAT
CTTCCCATGCTGCTTCAACTATGCTCTATCCCTTTGGACAGAATGATTAT
GTTTTTGCCATTTTGTCTTTGTTTCTCTTCTGCAAACTTCTGCGTCATCT
GTACTGTATCAAGGTTCTGAACGTTATTAGCCTTTTCTCTTTTTCTTAGG
GCTTCATCGCAACACATGCCAATTTCTGGGCTAACGGGTATTATCCCCTT
TTGTTTTGGTCTTCTTCCTTCTGTTATAACGTGCTTTCTATCACTCTATA
TTCTAACTCATATTTATTTGCTCATTTAACCTCTTATGTGTTTCACN
CCTTTTTTTTTTTTTTCTCTTTTTTTTTTTTTTTTTTTCCTTTTTGTNCG
TTTATTATCTTTTTTCCTCTATGATXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACATCA
TTGGTGTTGATGAGGCAGCCCAGTAGAGTCGAATCTTCAAGCACAAGGCA
TGTGAAGATCGAGTTCCGAGTTCAGTTACTTTCTGGTAACAGGTAGAATG
AAGGCTAGTGCCTTTGTGACTCCTTGAATTGTACCTGTCACACAGGCTGA
GGTGGGCAGGCAGCCTGATTTTGATCTGAAGATAACATATCAAGAAATTA
TAAATAATGTGCTTTAATCCAATAGAAACTATTTCAAAATTTAATTGCAT
TTTTTGTTACAACACAATTTTGTTACTATGTATATGTAGAAATTGCAGGC
AATGCATCCACCTCTGTGGTGAATACATGACTTGAGAATGCATGCCATCG
ATACCTTTATTTTATATTTTGTTCATTTTGCTTGTTTTTGTTTTTTTCGA
GACAGGTATTCTCTGCGAATGCCTGACTGCTCAGCAATTCACTTTGTAAA
CCAGGTTGTTCTCGAAATCATCAACCTTTCCTGCCTTTTGTCTTCTTAGT
GGCTGGGTATTATAGTTTTTGCGTTTATCACCCGCCCGGGTTTTCATCCT
ACATTTTTTAATTTAATTATATTTTTTTATTTAATTATAAGTGTTATTTT
ATTCATTCTGGCCTTCGGGGCCTGTTGTAGTCTTTTGTGTGCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_g08.b1 MSMg01no068_g08.b1 CHROMAT_FILE:
MSMg01no068_g08.b1 PHD_FILE: MSMg01no068_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:49 2005
         (140 letters)



>mm_chr9_87433296_87433835
          Length = 540

 Score =  248 bits (128), Expect = 1e-70
 Identities = 134/136 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   tttttttttctactttcaaaaactctcagacttctcctgttatggagatgagtttgtgtg 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 340 tttttttttctactttcaaaaactctcagacttcccctgttatggagatgagtttgtgtg 281

                                                                       
Query: 65  aagcttggggaacgttttcaaatgtatgcaaaaccttgctccaattagcactttctgaat 124
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 280 aagcttggggaacgttttcaaatgtatgcaaaaccttgttccaattagcactttctgaat 221

                           
Query: 125 gccatctaacacatgc 140
           ||||||||||||||||
Sbjct: 220 gccatctaacacatgc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 540
Length adjustment: 8
Effective length of query: 132
Effective length of database: 532
Effective search space:    70224
Effective search space used:    70224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)