BAC Information

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BAC

Clone NameMSMg01-068I01
Chromosome9 (Build37)
Map Location 102,521,873 - 102,522,146
singlet/doubletsinglet
Overlap geneCep63
Upstream geneEphb1, 9630041A04Rik, Ky, LOC664843
Downstream geneAnapc13, Amotl2, EG434510, Ryk, Slco2a1, Rab6b, Srprb, Trf, 1300017J02Rik, Topbp1, Cdv3, Bfsp2, Tmem108, 4932413F04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068I01.T7 (MSMg01no068_i01.b1)MSMg01-068I01.TJ (MSMg01no068_i01.g1)
ACCAG292982AG292983
length802864
length of high quality
(start - end)
277 (119 - 395)---
definitionCHROMAT_FILE: MSMg01no068_i01.b1 PHD_FILE: MSMg01no068_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:57 2005CHROMAT_FILE: MSMg01no068_i01.g1 PHD_FILE: MSMg01no068_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATTTTTTATTTTTTCTTTTTTTCTTTTTTTTTTTTTTTCCACCCCCCC
CNTNNNNGGGTTTNNNNNGGATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCGCGGAATTCAGAACAGTAATTTTTCTCACTC
CTCTTTTCTTTTTCTTTTTTCCCCTAGTTGCCAAAACAAAGAGGATTTGG
AGATGGAGGCTTTGTTGGAAGGAATACAAAATCGGGGACATAGTGGGTAA
GTTTGCCTTTGACTGTGAGCTCATTGCAGTTTAAAAACCTACCTGGGTTC
TGTTAGACCAAAGCTACGCTGAGCTAAGGCACATTTGTGGACAGCATCCC
TCCGACATCAGTTGCCTTCTCTCAGCATTACTAGGGAGGACTGTGGTTCC
TATCCTAGCTTGAGTTTTCCCCTTCAGCTCAGATGTTTTTTTTGTACCCC
GCCCCCCGACGTAGGTTACAGTGTGTTTTAGATAACAGTTGTGAGAAATA
ACAGAAAAAAATCTTGCTCCGGGATGAGGTTCTTGAATCAGCTCTTCTTT
GCTACCTTTTTTCCTGCATAATATAGTCTGATTGCTACTATCACTGTCTT
TTTTTGGCTGAATATAGTTGTACTTCAGTCATGTCATGGTATTCTATCCA
AATGAACCTTTTTATATATCCCCTTATCTATGTGGTTTAGTATGTTCTTG
AATTTTGTCTTTTTGCCTAGTCCTTATTGTTATTGCGATCTCTTTCTTTT
GCCTTCCTCCCATCTGCGGTTTATGTGGTGATTTTAACGGCTTACTTACG
AT
CCCCCCCCCTCCCCCNCCTCCCCCCTTTTCCCTTCCCTTTTTTTTTTNNN
TAGGGGAGTTNNNGGGACTATGATATGTGTAXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACACCAGGCA
CAAGAAAAGCAAGCAAATGGTCAAGGTTTCTTTTATCAGCCGAGACTGCA
GAGGCAAAGCACACGGCTATAGAGGAGGGCTGACCAACCCGACTCTTATA
GGATTCATCCTACTGATAAGTTCCCTTTGTCCACCCTTGGGACCATCCTG
TTTCAGGTCAACGGCAGAGAGTTTCTTGCACGAAGTCTTGCACTCAATTA
TCTACAGATATTCTGCTCCCATTATAGGCAAGACATTGACTTTTTTTTTT
TCAATACTGTAACGCACCGAGGCCAGTAGACATTTAAATAGACTCCCGGG
GCAGACCCCCAAAGGGAGGATTATTTTACACCGCTTTCTTTGTTCCGCGT
TTTTTAAAAAAAAAAAAAAAAAATTTTTCCGGGGGGGGGGGGTGCCATTC
ACATCCACTTTGTACAACCTTGACCCGGTCTATTCTCAATATGTTATACC
GGAATTATGCGTATTTTTAGATAACTTTTATTACCTCTCTTGCAAACATT
TCATAATATACATTTATTACCATTTTTTCGCCTTTTTCGCACCCTTATAT
TATACCATACACATATAGGGTCACCCACATTTTTTTTTTACTGTTTTACT
TATACTACAGGAGGCCAACACACCACTGTTTGTTTACGACAATTCAGTAT
ATCTACTTTCTTTCCTCCCGTCTTTTTATTACCAATACTTCCGTATAATC
GCTTATCTTTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_i01.b1 MSMg01no068_i01.b1 CHROMAT_FILE:
MSMg01no068_i01.b1 PHD_FILE: MSMg01no068_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:57 2005
         (277 letters)



>mm_chr9_102521670_102522346
          Length = 677

 Score =  499 bits (258), Expect = e-146
 Identities = 270/274 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagaacagtaatttttctcactcctcttttctttttcttttttcccctagttgc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ggaattcagaacagtaatttttctcactcctcttttctttttcttttttcccctagttgc 418

                                                                       
Query: 64  caaaacaaagaggatttggagatggaggctttgttggaaggaatacaaaatcggggacat 123
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 417 caaaacaaagaggatttagagatggaggctttgttggaaggaatacaaaatcgggggcat 358

                                                                       
Query: 124 agtgggtaagtttgcctttgactgtgagctcattgcagtttaaaaacctacctgggttct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agtgggtaagtttgcctttgactgtgagctcattgcagtttaaaaacctacctgggttct 298

                                                                       
Query: 184 gttagaccaaagctacgctgagctaaggcacatttgtggacagcatccctccgacatcag 243
           ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gttagactaaagctaagctgagctaaggcacatttgtggacagcatccctccgacatcag 238

                                             
Query: 244 ttgccttctctcagcattactagggaggactgtg 277
           ||||||||||||||||||||||||||||||||||
Sbjct: 237 ttgccttctctcagcattactagggaggactgtg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)