Query= MSMg01no068_n03.b1 MSMg01no068_n03.b1 CHROMAT_FILE:
MSMg01no068_n03.b1 PHD_FILE: MSMg01no068_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:23 2005
(574 letters)
>mm_chr9_22926886_22927862
Length = 977
Score = 998 bits (516), Expect = 0.0
Identities = 560/578 (96%), Gaps = 8/578 (1%)
Strand = Plus / Plus
Query: 1 ctagcagtggtaataggtgtcattatatacccattagcagagtgaaagtcagagcaaatg 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 ctagcagtggtaataggtgtcattatatacccattagcagagtggaagtcagagcaaatg 264
Query: 61 atagcgtaaatgcttgggaggatgctcgggaggactcgaatcagcaggactctcactgtg 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attgcgtaaatgcttgggaggatgctcgggaggactcgaatcagcaggactctcactgtg 324
Query: 121 atgggaaagcaaaatggtccagacgctttggaaaacagcttggtagttacttatataacg 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgggaaagcaaaatggtccagatgctttggaaaacagcttggtagttacttatataacg 384
Query: 181 aacacattttttttttttacaatagtactccaacaatgatgctccatgataaccacataa 240
||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct: 385 aacacattttttta----accatagtactccaccaatgatgctccatgataaccacataa 440
Query: 241 aggggttgattattgaactgtgtgagtgttctgggacacgactgtaacctcaatcctggg 300
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggggttgaaaattgaactgtgtgagtgttctgggacacgactgtaacctcaatcctggg 500
Query: 301 agttacaaagttgggaggatagctgaatagtgattcagagaccttgtctcaaaaataaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agttacaaagttgggaggatagctgaatagtgattcagagaccttgtctcaaaaataaag 560
Query: 361 tgaacaaaaaaaa---ataaagaaaacaataaagaacattggatatgggtt-gtgttcac 416
||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 tgagcaaaaaaaataaataaagaaaacaataaagaacattggatatgggtttgtgttcac 620
Query: 417 agaaaattgcatgtacttgtcaaaaacagttttactcataattgccagaacctggaagca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaaaattgcatgtacttgtcaaaaacagttttactcataattgccagaacctggaagca 680
Query: 477 gccacaatgttctttcggtagatgaacagattcacagtctgtgatacatctagacaaggg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 681 gccacaatgttctttcggtagatgaacagattcacagtctgtgatacatctagtcaaggg 740
Query: 537 catattatttagctctaaaaagaaacaatctattaaac 574
||||||||||||||||||||||||||||||||||||||
Sbjct: 741 catattatttagctctaaaaagaaacaatctattaaac 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 977
Length adjustment: 10
Effective length of query: 564
Effective length of database: 967
Effective search space: 545388
Effective search space used: 545388
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no068_n03.g1 MSMg01no068_n03.g1 CHROMAT_FILE:
MSMg01no068_n03.g1 PHD_FILE: MSMg01no068_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:23 2005
(578 letters)
>mm_chr9_23048096_23049073
Length = 978
Score = 1021 bits (528), Expect = 0.0
Identities = 570/594 (95%), Gaps = 16/594 (2%)
Strand = Plus / Minus
Query: 1 aattgagttgctcttaaagaggaaaatatgtgttaaaaacatgaaaaccaaacttctcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 734 aattgagttgctcttaaagaggaaaatatgtgttaaaaacatgaaaaccaagcttctcag 675
Query: 61 atacgattagcaaagccatccctggcacacccatttgcttcccagatctacagttcagag 120
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 674 atacgattagcaaagccatccctggcgcacccatttgcttcccagatctacagttcagat 615
Query: 121 tgagccttagtcctcaagccgccccatccctgtgggtcagtaaccagcagtagagcagaa 180
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 614 tgagccttagtcctcaagccgtgccatccctgtgggtcagtaaccagcagtagagcagaa 555
Query: 181 ggaaaacaagcccttttgaggattgcccagggaagcctgggtgttgtaggagttacaaaa 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ggaaaacaagcccttttgagggttgcccagggaagcctgggtgttgtaggagttacaaaa 495
Query: 241 atacctgatcttgacaagcaaacagcgctgacatccaggggaagtggcggggcggagaag 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 atacctgatcctgacaagcaaacagcgctgacatccaggggaagtggcggggcggagaag 435
Query: 301 ctgctgcagcccatctgtcattttgacaaagtaactttctggtcaccagtgagacccttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ctgctgcagcccatctgtcattttgacaaagtaactttctggtcaccagtgagacccttt 375
Query: 361 taaagacatctgcacaattgaccccgaccaccagcaatcactgagcctttcaaaggtccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 taaagacatctgcacaattgaccccgaccaccagcaatcactgagcctttcaaaggtccc 315
Query: 421 tgcgggacagaagcctcagttggctgtggcctggactctcaaggcctgcctctatgtcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tgcgggacagaagcctcagttggctgtggcctggactctcaaggcctgcctctatgtcat 255
Query: 481 gcttagggcattgtggtgtttcagatgctaaaaagatccctggccctgtgctgc------ 534
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 254 gcttagggcattgtggtgtttcagatgctaaaaagatccctggccttgtgctgcccaggt 195
Query: 535 ----------tcagacagtacatggtcgcctgaataacactaggcagaaaagca 578
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tggcactagctcagacagtacatggtcgcctgaataacactaggcagaaaagca 141
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
