BAC Information

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BAC

Clone NameMSMg01-069E03
Chromosome9 (Build37)
Map Location 7,043,936 - 7,044,176
singlet/doubletsinglet
Overlap geneDync2h1
Upstream geneLOC676037, Pdgfd, Ddi1, EG664919, LOC100039400, LOC100039418, EG547034, LOC100039658
Downstream geneDcun1d5, Mmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069E03.T7 (MSMg01no069_e03.b1)MSMg01-069E03.TJ (MSMg01no069_e03.g1)
ACCAG293557AG293558
length708692
length of high quality
(start - end)
242 (59 - 300)285 (74 - 358)
definitionCHROMAT_FILE: MSMg01no069_e03.b1 PHD_FILE: MSMg01no069_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:58 2005CHROMAT_FILE: MSMg01no069_e03.g1 PHD_FILE: MSMg01no069_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCGCTATACGACTCCTATAGTGCGNAGATCCGCGGAATTCTCCTGGATT
CCGACAAGCATTTCTAGCACAGGGGCAAGCACAGTTTTGGTGCTAGTGAC
TCATTGCCACCCCTGGGAGTTTTAACAGTGAGTGTTCTTATAGGAGGCTA
AGGAAACAGACACTTACACTATGTCATATGAAATTGCAGACTTAAGCTTA
GTTTGGACAATAAAAAAGTCACCTTATCTGCCAAGAACCAGCCTCAGCTT
GGAGAGGAAGGGTGTTTGGGAGTAGTAAAAGATGGTTAGGGGGTTTTCAG
AGCCGATTTTTTTCCATCCATAACACTTATCTTGTAAATAAATATTTTTT
TTTTTCCCCCCCCCCACCTCCTCTATTGTGTATACTAGACGACCGTCCTG
TGTTTCCCTTGAAATAAAACTTTATATTGTTTGGGACAGTTTAAATTCTG
ATAACCCCAACAAACAACATTTATTTTCCTAACTTCTTCCCCCCCTAATT
CCCTACTTTCCCTCTTACACAACAATCTAGTTTTCCAGATAATATTGAAT
TCAATACCTTATTATATTTAACCAGTTCCATCTTTTAGAGACATCACATA
CTTCTTTCCCTCGCCTACTTCCTTTTTACCTTCCCTTCATATGTCACCCT
TTTCCGTACTTCCCTTTTTCCTATGCATTCTACATTATTTTCCCTTTATC
TGATCTTA
TCGATGATGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCTAATGGCAGAG
AAGCACCTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
CGTCTGGCGGTTCCTCAGATAATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTTTTTTTGTTTATACCCCCCCCCATGCCCTAACTGGTATCAAT
GACCTATGCTCCCCTATGCTCATAAAAAAATAACTTATAATAGTGGGAAG
CTGGAAAGAACCCCGATGCCCCTCACCATAGGAATGCACACTTACTATGT
GGTACCTCTATTTAACGTATTACTATCCAGCTATTATTAACACTGACTTT
TTGCCATTCCTACTCAATCTGGATGCTATCTGCACATCTCCTTTTTTTCT
TATTTCCCACCCTTCTTACGGAACTCCCTCCCTATGCTCTTCTTGTATTT
CCGCTATACTTCTTCTCCCCCTTATCCCTCTTACCCCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_e03.b1 MSMg01no069_e03.b1 CHROMAT_FILE:
MSMg01no069_e03.b1 PHD_FILE: MSMg01no069_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:58 2005
         (242 letters)



>mm_chr9_7043808_7044448
          Length = 641

 Score =  437 bits (226), Expect = e-127
 Identities = 238/242 (98%), Gaps = 1/242 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttctagcacaggggcaagcacagttttggtgctagtgactcattgccacccctggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||
Sbjct: 369 catttctagcacaggggcaagcacagttttggtgctagtgactcattg-gagtcctggga 311

                                                                       
Query: 61  gttttaacagtgagtgttcttataggaggctaaggaaacagacacttacactatgtcata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gttttaacagtgagtgttcttataggaggctaaggaaacagacacttacactatgtcata 251

                                                                       
Query: 121 tgaaattgcagacttaagcttagtttggacaataaaaaagtcaccttatctgccaagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tgaaattgcagacttaagcttagtttggacaataaaaaagtcaccttatctgccaagaac 191

                                                                       
Query: 181 cagcctcagcttggagaggaagggtgtttgggagtagtaaaagatggttagggggttttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 cagcctcagcttggagaggaagggtgtttgggagtagtaaaagatggttagggggttttc 131

             
Query: 241 ag 242
           ||
Sbjct: 130 ag 129


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 641
Length adjustment: 9
Effective length of query: 233
Effective length of database: 632
Effective search space:   147256
Effective search space used:   147256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)