BAC Information

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BAC

Clone NameMSMg01-069E20
Chromosome9 (Build37)
Map Location 111,444,199 - 111,444,492
singlet/doubletsinglet
Overlap genenone
Upstream geneSetd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615
Downstream geneStac, 4930545L08Rik, Arpp21, LOC100039341, LOC620760, LOC100043800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069E20.T7 (MSMg01no069_e20.b1)MSMg01-069E20.TJ (MSMg01no069_e20.g1)
ACCAG293591AG293592
length706839
length of high quality
(start - end)
294 (64 - 357)47 (54 - 100)
definitionCHROMAT_FILE: MSMg01no069_e20.b1 PHD_FILE: MSMg01no069_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:01 2005CHROMAT_FILE: MSMg01no069_e20.g1 PHD_FILE: MSMg01no069_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTGCGGCGCTATACGACTCCTATAGTCACAGATCCGCGGATTCATCT
ACTATTGCACAATTGGACTTCATAAGATGCTGGGAGAATGAACAGCAAAT
AAAAGGGAGACTAGACGAGAACTTCAAACACTCAAGAGGGAGTTAGAGCA
GGCATATGTCAGAGGCAATTGATCCAGTAGATCTGGGACAGTGACAAGAA
CTCAGAAACAGAAGGAAAGTTTATACATCTGTAAAGACACACAGAAGGAA
AACTGGCCCCTTTAAATCCCGTAAGTAAGATTATCAGAAACCTACAGACC
TCAAACACCCTGAACCAAACAAAACCATTTATTCAAAGTATATTGCGCAT
GAAGTAGCTCAACAGTTAGAGCTCCTACCCAGCCAGGAGAGTAGATGCTA
CAGAGAAATTATCATGGTGCATTGCTTTGTCCCTATGAAACACCACCTTC
CATCTCAGGCCTAAATTATCCTTGCTGATTACAATATCAGGGTAAAGCAG
AGCTAACCCTGGAGCCTCAGCCTAAGGCCTAGTCTCAGGAATACAGAAAG
TCCTCAATACCGGTAAAGAAATGTCCCCGGAACATCACGGATTATCAGCA
AGAGAATCTCACTCATAGTAATCATCTGAGAAATATAAACGAGACAACTG
AGCCTCCTTGTTATAATGAACCTGCTCCCTTCATGAGGCACCCATTCTAA
GAACTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXATCACAAAGAAAGATGAAACGGAAACAAATTAAACTGGGGCATTATC
ATTGCTCAGTAAAATAAGTCAAGCGAGAGAGAGGGCAGGGAGAGTGGAGG
GAGTGGTGTGTAAACTTCTTTCTCTCTCCTCTCTACCTATACCCTACATC
TCTCCTCATTTCAACTAATTATGTCATTGTCTTCTCTTTTTTCCCTTTAC
CCTACTCTCCTCTCCACCATTCTTTATCCTCTTTCCCGTATCACTTTCGA
TTATCAACCTCTCATTCTTCTATCCTCATCTATTTATCTTATCTCCTCTA
TCCTCATACTTTCTTCTATCTACATTCTTTATTTTGATAAATTTCCCCAG
GAACAGAACCCCACGTTAGAGAATTCGTAATATGTTTTTGTACTATTTCC
TCCCTCCCCTAATAAAAAAAAAAAAAACCCTCTGGGGGGGGGGTTCGGTT
CTCCTTATTCTACCTCAAACCCTATCATCTTTCCTCAATCACCATTACTA
CCTTTACTTACTAATCCCCATAATTCTTTTACCTTATCCCTTTCCTCCTC
TTTCTACTTCATTATCAATCTAAATATTTACCTCCACTCCTTCTCCCCAT
CCTTCCGCTTTTTTATTTCACGTCCCTCCATTCTTCGCCGTACGTCCGTT
TCTTTCCTATTCTCTGCCCTATTTTTATTTATCTTTACCTCATCACCACA
TTCACCTCTTTTTCGCCCTTATTCGCCCTATCTTTCTTTATTAATCTTTC
TCAATATCCTGCCAGTTATTTAATATTTTTCACTATTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_e20.b1 MSMg01no069_e20.b1 CHROMAT_FILE:
MSMg01no069_e20.b1 PHD_FILE: MSMg01no069_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:01 2005
         (294 letters)



>mm_chr9_111443999_111444692
          Length = 694

 Score =  522 bits (270), Expect = e-153
 Identities = 288/294 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggacttcataagatgctgggagaatgaacagcaaataaaagggagactagacgagaact 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 494 tggacttcataagatgctgggagaatgaacagcaaataaaagggagactagatgagagct 435

                                                                       
Query: 61  tcaaacactcaagagggagttagagcaggcatatgtcagaggcaattgatccagtagatc 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tcaaacactcaagaggtagttagagcaggcatatgtcagaggcaattgatccagtagatc 375

                                                                       
Query: 121 tgggacagtgacaagaactcagaaacagaaggaaagtttatacatctgtaaagacacaca 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgggacagtgacaagaactcagagacagaaggaaagtttatacatctgtaaagacacaca 315

                                                                       
Query: 181 gaaggaaaactggcccctttaaatcccgtaagtaagattatcagaaacctacagacctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gaaggaaaactggcccctttaaatcccgtaagtaagattatcagaaacctacagacctca 255

                                                                 
Query: 241 aacaccctgaaccaaacaaaaccatttattcaaagtatattgcgcatgaagtag 294
           || |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 254 aaaaccctgaaccaaacaaaaccatttattcaaagtatattgcacatgaagtag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)