BAC Information

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BAC

Clone NameMSMg01-069H13
Chromosome9 (Build37)
Map Location 49,268,725 - 49,269,000
singlet/doubletsinglet
Overlap geneTtc12
Upstream geneRexo2, Rbm7, EG434402, Nnmt, Zbtb16, Htr3a, Htr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5, EG235327, Drd2, Ankk1
Downstream geneNcam1, EG667975, LOC100042806, LOC100043346
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069H13.T7 (MSMg01no069_h13.b1)MSMg01-069H13.TJ (MSMg01no069_h13.g1)
ACCAG293721AG293722
length705701
length of high quality
(start - end)
275 (76 - 350)198 (162 - 359)
definitionCHROMAT_FILE: MSMg01no069_h13.b1 PHD_FILE: MSMg01no069_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:14 2005CHROMAT_FILE: MSMg01no069_h13.g1 PHD_FILE: MSMg01no069_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCACATAGAGCCGCGGA
ATTCTGTCTGTTCCTAGAAAAAGTAACTCCCAAACTTAGTTCTATAGTTA
TATCACCCAGAAAGCTGAAATTGTTTCTGTCTGGACCTCATTTAGACAAT
AACTTAATTGGTCCAGGGGCAGCCAGGCCCAGATATATATGAGCCTTCCA
AGTGATTCTAGCATGAAGCCAATGCTGACTCTTTTAGACCTAGGGCCTTG
CTTTACTTCTTGAGCAAGTCTCTACATGAAAGTGAGAGCTGACAGAATCA
CTAATTTGGAAGAGAGCTTTCCATGTGTCCAGACTCCTTGCGGGCAGCAA
TTAGCTTGTTCTCACATGCACAGAAATGTCTTAATTGTCAACTCTGGTAG
CTATCCTGAGAACCAAAGCACTGGCCTCCTTCCCTTAACTAAGTAGGTAG
GCCAGAGCCTAATGACTTCATATCTGAGACATCTGATCAAACATTCTCTT
TTACACTGTGCGATGAGAACTGTATAAAGGCCTACTTCCACATGGTTAAA
GCCCTCTTGGCCCTGACGAACTATAGCTAGGTTAGCTCCTAGTTTTGCGA
ACAGTTTGGTAGGCGTTTTTCCCCCTTTTACGCGTTTTCTGATTTCCCCG
ACAATATACTCCAGGAATTTGGGACAGCCCCGCCCTGTTGGATGTATCAT
GTTTT
AATGCAGTXXXXXXXXXXXXXXXXXXXXXTTTCAACAATGGAGGTGACCT
ATAGAATGTTCAGCGAAATTCCTTGGGGCATGTCCAATCTTTGGTGTGAG
GATATCTCCAACCAGCAATCCAGCTACCAGCAAAAGCATCAAGAACAGCA
GTTGTAGAGTGGGGAGTAGCCGGTGCCAGCTCTCTCAGGGCTCTGGCATT
TTTATACCCTTTCAAAAGTCCACAGAACTCTAAATATAATCTTCAGCTGG
CAAAATCATGTCCCTGCCAGAGCATGAGACAAATCATAGTCAGCTGCTAT
GGACAATCTGAAGTATTCTTGTATCCTATACCCAGGATTAAAACAAAACC
ACGCTGGGCGTGGTGGCACACGCCTTTAATCCTAACACTTGGGAGGCAGA
GGCAGGTGGATTTCTGAGTTTGAGGCCAGTCTGCTTTACAATGTGAGTTC
CAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAAAATTCCCCC
CCACAAGGAGAGATCAACGAATTCTATTACACTTTCCCCTAACATTTTTA
TGCCTTTAATGAAGCCTAAACTCTCACCACAGCTGTGGACGAATTCTCCT
GACCGATGATACCTGGCCTCTAACCTTATCCTTTCTTGGATGCCATCTCA
TTCCCTTTCTCTCCACCTCTTCTGAAATGTTGGTGGGACCCATACATGGC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_h13.b1 MSMg01no069_h13.b1 CHROMAT_FILE:
MSMg01no069_h13.b1 PHD_FILE: MSMg01no069_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:14 2005
         (275 letters)



>mm_chr9_49268372_49269047
          Length = 676

 Score =  482 bits (249), Expect = e-140
 Identities = 269/279 (96%), Gaps = 7/279 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcccaaacttagttctatagttatatcacccagaaagctgaaattgtttctgtctgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 actcccaaacttagttctatagttatatcacccagaaagctgaaattgtttctgtctgga 570

                                                                       
Query: 61  cctcatttagacaataacttaattggtccaggggcagccaggcccagatatatatgagcc 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 569 cctcatttagacaataacttaattggtccaggggcagccagtcccagatatatatgagcc 510

                                                                       
Query: 121 ttccaagtgattctagcatgaagccaatgctgactcttttagacctagggccttgcttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttccaagtgattctagcatgaagccaatgctgactcttttagacctagggccttgcttta 450

                                                                       
Query: 181 cttcttgagcaagtctctacatgaaagtgagagctgacagaatcactaatttggaagaga 240
           |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 449 cttcttgagcaagtctctacatgaaagtgagatctgacagtatcactaatttggaagaga 390

                                                  
Query: 241 gcttt----ccatgtgtccagactccttgcgggcagcaa 275
           ||       ||||||||||||||||||||||||||||||
Sbjct: 389 gc---acacccatgtgtccagactccttgcgggcagcaa 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 676
Length adjustment: 9
Effective length of query: 266
Effective length of database: 667
Effective search space:   177422
Effective search space used:   177422
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)