BAC Information

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BAC

Clone NameMSMg01-069O21
Chromosome9 (Build37)
Map Location 27,642,086 - 27,748,450
singlet/doubletdoublet
Overlap geneOpcml
Upstream geneGlb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b, Spata19, LOC666440, LOC100041202
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069O21.T7 (MSMg01no069_o21.b1)MSMg01-069O21.TJ (MSMg01no069_o21.g1)
ACCAG294072AG294073
length683697
length of high quality
(start - end)
231 (113 - 343)189 (124 - 312)
definitionCHROMAT_FILE: MSMg01no069_o21.b1 PHD_FILE: MSMg01no069_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:49 2005CHROMAT_FILE: MSMg01no069_o21.g1 PHD_FILE: MSMg01no069_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,642,086 - 27,642,315)(27,748,262 - 27,748,450)
sequence
AATACGACTCCTATAGGGCGATGATCCGCGGAATTCGCTAGTTCTTTCCA
ATGTACCCTTCCACTCACAGCAGATTTTAAGCTACTGATGTCAGTGATAT
TTTCTACCTAAGTCCCCACTGATATCAGGTTCACACTTGCTATCTGCCAA
ATTCTGGCTTCTAGAATGTCACATTCCTTCATTGATCACTTGCTTATTAC
AAAGGCTATAAGACAGTGGTGGCAATAACTATGGCTTGGTTAGTTTTATA
AGCATTTCTCCAAACTCATTTCTTGTTTGTTAGCGATTGCATCACCTGTA
CTGTTATTGTAACTAAGACTTCTTAAATGCATTCACAGATACTTTTGTTT
CTCTGCCCCCCCCCCCATCCCTAGAATATTGAGATGTCCTAATAAAACGA
CACATTAAAAAAATAAAAAGATTCTTTAAGATCTATAGCTAGTGTCCTGA
TTTACACATGACACAGTATATACGTCTATCAAAATATCATAAGCCATCTG
TGAACTGAAGTCATCTGCAAGGACGAGCCTCCATTACCAAAATGCCTTCA
CAAGATCAAGCTGTAGGCAAGCTTATACCTCATTTCCTTAAATACTGACT
ATTCGACGAGGTCCCAGGCCATTATGCCTGGTGATGCCTCTGAACTAACG
ATTCTTGCGTCCGCATAACGCATGCTGACCTAG
TGAAGTGAGAGGCTGGCGGCGCCTGGTTTTCTCATTGGGTGAACTATAGA
AGGATTGCANACATCAATTTNGTTTACTGCACCCAAATGTTTGCAAATAC
CTGGCCAGATTATTTCCTGAACTAATTCCAAGAAAGGGGTAGTGCTAGCT
TAAACTAAGACAGATCTAGGCTCAGAGCTCAGTATGGCCATATCAGGGGC
ATAAAAGAACTAACTAATATATCGCCAGTCAATGGATCAGTCTCCACAAA
AAGGCTAGATGTCACATGCATGGCAATGAAGGGGTCAGGGCTTGACCACT
TCACAAAGAGACTTTTATTCTGAGAAGGAAACAAATACAAGCTGCGTATC
ATATTTTTTTTCTCCCCCACCCCCCTGCAAGCCATGGGCCCTTGCCTGTT
TGTCCTACCTCAGTCTAAAAAAAAAACAAAGTATACGGGGGGGGTGGCAG
CTGCTATAGGACTCTCTAGAAGGTTCAGAAGAACCTCACCAGACAGTTAA
GCTTATAAAGTTACTCCACCCAACTACGTCATGTGGTAAGTTGACTAATT
CCTTCATCCAATGTTTGGACTTATTCTGTATATATTCACGTACATCTTGC
TATCTTCCTAACATTTCCCTAGGCGGAATAAACCCCCATTACCCTACTTC
CATTACCCCCCCCTCTCTTTTCCCCCTGTCCCCCCTGTCCCCCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_o21.b1 MSMg01no069_o21.b1 CHROMAT_FILE:
MSMg01no069_o21.b1 PHD_FILE: MSMg01no069_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:49 2005
         (231 letters)



>mm_chr9_27641886_27642516
          Length = 631

 Score =  422 bits (218), Expect = e-122
 Identities = 227/230 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccccactgatatcaggttcacacttgctatctgccaaattctggcttctagaatgtcac 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccccactgatatcagattcacacttgctatctgccaaattctggcttctagaatgtcac 260

                                                                       
Query: 61  attccttcattgatcacttgcttattacaaaggctataagacagtggtggcaataactat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attccttcattgatcacttgcttattacaaaggctataagacagtggtggcaataactat 320

                                                                       
Query: 121 ggcttggttagttttataagcatttctccaaactcatttcttgtttgttagcgattgcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcttggttagttttataagcatttctccaaactcatttcttgtttgttagcgattgcat 380

                                                             
Query: 181 cacctgtactgttattgtaactaagacttcttaaatgcattcacagatac 230
           |||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacctgtactgagattgtaactaagacttcttaaatgcattcacagatac 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no069_o21.g1 MSMg01no069_o21.g1 CHROMAT_FILE:
MSMg01no069_o21.g1 PHD_FILE: MSMg01no069_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:49 2005
         (189 letters)



>mm_chr9_27748062_27748650
          Length = 589

 Score =  358 bits (185), Expect = e-103
 Identities = 188/189 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattccaagaaaggggtagtgctagcttaaactaagacagatctaggctcagagctcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aattccaagaaaggggtagtgctagcttaaactaagacagatctaggctcagagctcagt 330

                                                                       
Query: 61  atggccatatcaggggcataaaagaactaactaatatatcgccagtcaatggatcagtct 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 329 atggccatatcaggggcataaaagaactaactaatacatcgccagtcaatggatcagtct 270

                                                                       
Query: 121 ccacaaaaaggctagatgtcacatgcatggcaatgaaggggtcagggcttgaccacttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ccacaaaaaggctagatgtcacatgcatggcaatgaaggggtcagggcttgaccacttca 210

                    
Query: 181 caaagagac 189
           |||||||||
Sbjct: 209 caaagagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)