Query= MSMg01no070_m09.b1 MSMg01no070_m09.b1 CHROMAT_FILE:
MSMg01no070_m09.b1 PHD_FILE: MSMg01no070_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:57 2005
(568 letters)
>mm_chr9_92994467_92995435
Length = 969
Score = 1054 bits (545), Expect = 0.0
Identities = 564/571 (98%), Gaps = 5/571 (0%)
Strand = Plus / Minus
Query: 1 acttga-actttgtctc-acctaaaac-aaacaagaaaaacataatccattatgaaagga 57
|||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 769 acttgagactttgtctcaacctaaaacaaaacaagaaaaacataatccattatgaaagga 710
Query: 58 gctgcctgtcattgtacagtattgagctttcaagagaacaaaagattttttttctattta 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gctgcctgtcattgtacagtattgagctttcaagagaacaaaagattttttttctattta 650
Query: 118 aaatgttcatcacctatctcatgtggcatcttctattcaggacattgcttataaattcaa 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aaatgttcatcacctatctcatgtggcatcttctattcaggacattgcttataaattcaa 590
Query: 178 acttccctaacaaaaatcttttatgtcacaaatataatgcattttcttctgtgtgcaaag 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 589 acttccctaacaaaaatcttttatgtcacaaatataatgcattttcttctgtgtgc--ag 532
Query: 238 tcattgagattaatgggggaaaggtggtcattatttttctgtacagaccacccacagtgc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tcattgagattaatgggggaaaggtggtcattatttttctgtacagaccacccacagtgc 472
Query: 298 atgtttctactctatgtggtataatatagttgcttccgaaaaccataaatacttgggctt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 471 atgtttctactctatgtggtataatatagttgcttccgaaaaccataaatacttgggttt 412
Query: 358 ccatcggtataaattcacaaaatacccagaagaggtaaaagagtggtcattactcactta 417
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ccatcagtataaattcacaaaatacccagaagaggtaaaagagtggtcattactcactta 352
Query: 418 ttgaatttttttgtttctttgtttgagtttaacttaactacataattgactttatcacat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttgaatttttttgtttctttgtttgagtttaacttaactacataattgactttatcacat 292
Query: 478 gaactgtccatttgattaactggttaactaatgaggccaaacaaaatatcatgtaaataa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gaactgtccatttgattaactggttaactaatgaggccaaacaaaatatcatgtaaataa 232
Query: 538 aatgtatttagaagaactataattgaatcta 568
|||||||||||||||||||||||||||||||
Sbjct: 231 aatgtatttagaagaactataattgaatcta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 969
Length adjustment: 10
Effective length of query: 558
Effective length of database: 959
Effective search space: 535122
Effective search space used: 535122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no070_m09.g1 MSMg01no070_m09.g1 CHROMAT_FILE:
MSMg01no070_m09.g1 PHD_FILE: MSMg01no070_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:57 2005
(539 letters)
>mm_chr9_92802562_92803500
Length = 939
Score = 1019 bits (527), Expect = 0.0
Identities = 536/539 (99%)
Strand = Plus / Plus
Query: 1 ttatatttctattagcattctgtttctaaaagactaactgttattgcttttaaagtttat 60
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 201 ttatatttctattagcattctgtttctaaaagactaactgttaatgcttttgaagtttat 260
Query: 61 acagctgaaataaaacatggcaatattacaatattagcaaacattatctctgtggtagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagctgaaataaaacatggcaatattacaatattagcaaacattatctctgtggtagtt 320
Query: 121 tgaaagagaaatatccatagactcagtcttacatatacttatgattttggaaattttgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaagagaaatatccatagactcagtcttacatatacttatgattttggaaattttgga 380
Query: 181 atgttaggagctgcggtcttgctggtggaaatatgtggaaatatgacagtgcactttgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgttaggagctgcggtcttgctggtggaaatatgtggaaatatgacagtgcactttgtt 440
Query: 241 tttgataccacttcataactatgagccgaaacagccttttccccttaactttttttctta 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgagaccacttcataactatgagccgaaacagccttttccccttaactttttttctta 500
Query: 301 tacaactaggttatgattataagaaagtgaataatattttttcagaacacacaccctaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacaactaggttatgattataagaaagtgaataatattttttcagaacacacaccctaaa 560
Query: 361 acacagtagtttcagttccttcaggatcaaatggaaattgttgtttgagaatttctccct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acacagtagtttcagttccttcaggatcaaatggaaattgttgtttgagaatttctccct 620
Query: 421 cataatcttatggcctcctctagagcaatgtgaagaattatctggagccagaagacatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cataatcttatggcctcctctagagcaatgtgaagaattatctggagccagaagacatca 680
Query: 481 cattgtgtttcctcattaatgagcctggcctacatctaatcagcatggtctatactcaa 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cattgtgtttcctcattaatgagcctggcctacatctaatcagcatggtctatactcaa 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
