BAC Information

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BAC

Clone NameMSMg01-071B07
Chromosome9 (Build37)
Map Location 78,353,348 - 78,353,659
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc1, Klhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1
Downstream geneSlc17a5, Cd109, LOC384957, EG666456, LOC436085, LOC235509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071B07.T7 (MSMg01no071_b07.b1)MSMg01-071B07.TJ (MSMg01no071_b07.g1)
ACCAG294950AG294951
length686689
length of high quality
(start - end)
514 (44 - 557)437 (73 - 509)
definitionCHROMAT_FILE: MSMg01no071_b07.b1 PHD_FILE: MSMg01no071_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:22 2005CHROMAT_FILE: MSMg01no071_b07.g1 PHD_FILE: MSMg01no071_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATAATTTGCGGCGCTATACGACTCCTATATGCAGAAATGCGCGGAAT
TCATCTTCTACACCCCATTTAGCAATATTATAGTCACTTTCCCATTTAAC
TACTCATCCCATGGCCTCAGAACTACATTCAGTCTGTCCCCAACCTCTGC
TGACTTCGTTTTTTAAATATATTTTATTAATTATTTTTGAAATTTTCATA
CACTGATTTTTTTTTTTTATGTAAGTACACTGTAGCTGTCTTCAGACACT
CCAGAAGAGGGCATCAGATTTCATTACGGATGGTTGTGAGCCACCACGTG
GTGGCTGGGATTTGAACTCGGGACCTTCGGAAGAGCAGTCGGTGCTCTTA
ACCACTAAGCCATCTCGCCAGCCCCATATACTGCATCTTGATCATTGTTT
CAGGAAAGATCACATTTACCTCCCACTCCCCACCTAACTCCTCCCAGACC
CACCCCCACCTTCTTACTCCTCCACCTAACTCCTCCCAGATCCACCCCAC
CTCCCTACTTCTCCACCTAACTCCTCTCAGATCCACCCCACCTCCCTACT
CCTCCACCTAATTCCTCCCAGATCCATCCCACCTCCCTTTCTTTCATTTT
TATCATTTTTTAACATTTATTGACTTTTATGTGCGTAGGTTTTATGCACA
AGTGCCTGTGCATCCCTTTTGAACTCTACGCCTTCG
NCCCATGAAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGCACACTATAAATCAATGGTTCCCAA
TCTTTCTAATGCTTAGGCCCTTTAATACATTTCGCGTTGTGTTGGATTTC
CAATCGTACATTTCTTTGCTACTTCATAACTCGACCACTCTTCTGAATTG
TAATGTAAATATCTGATATACAGGATTATATTCTGATCCCAGGTTGAGAC
TACTGCCTTAACTGGAGTAGGTTAAAAAGTACAAAAGGGTAGCCAGAAAT
GGTGGAGCACACCTTTATCACAGAACTTGGGAGGCAGAAGCAGGTAGATC
GGAGTTCAAGGCCAGCCTGGTCTAAATAGGAGACTCCAGGACGGTCGGGG
CGACATAGATATTCTGTCTCAATAAGGAAGGACAAAGGGATCAAGAGCTG
ACATTTTAATGATGCCCTTTTCCCAAACTACTGGGTAACTTAAAATAATT
TGCTTGGCCCAGGCGTGGTGGTGCATGTCTTTAAGCCCAGCACTCGGTAG
GCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGTCTGGTCTACAAAGTG
AGTTCACGGGCAGCCAGGGCTGCATAGAGAAACCCTGTCTCGAAAAAACA
AAACAAAACTTGCTTGACACAGGAGTTAGGGCCCACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_b07.b1 MSMg01no071_b07.b1 CHROMAT_FILE:
MSMg01no071_b07.b1 PHD_FILE: MSMg01no071_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:22 2005
         (514 letters)



>mm_chr9_78353344_78354258
          Length = 915

 Score =  572 bits (296), Expect = e-167
 Identities = 308/312 (98%), Gaps = 2/312 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcatcttctac-accccatttagcaatattatagtcactttcccatttaactactc 62
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gaattcatcttctacaaacccatttagcaatattatagtcactttcccatttaactactc 257

                                                                       
Query: 63  atcccatggcctcagaactacattcagtctgtccccaacctctgctgacttcgtttttta 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 atcccatggcctcagaactacattcagtctgtccccaacctctgctgacttcgtttttta 197

                                                                       
Query: 123 aatatattttattaattatttttgaaattttcatacactga-ttttttttttttatgtaa 181
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 196 aatatattttattaattatttttgaaattttcatacactgatttttttttttttatgtaa 137

                                                                       
Query: 182 gtacactgtagctgtcttcagacactccagaagagggcatcagatttcattacggatggt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 gtacactgtagctgtcttcagacactccagaagagggcatcagatttcattacggatggt 77

                                                                       
Query: 242 tgtgagccaccacgtggtggctgggatttgaactcgggaccttcggaagagcagtcggtg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  tgtgagccaccacgtggtggctgggatttgaactcgggaccttcggaagagcagtcggtg 17

                       
Query: 302 ctcttaaccact 313
           ||||||| ||||
Sbjct: 16  ctcttaagcact 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 915
Length adjustment: 10
Effective length of query: 504
Effective length of database: 905
Effective search space:   456120
Effective search space used:   456120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)