BAC Information

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BAC

Clone NameMSMg01-071G13
Chromosome9 (Build37)
Map Location 41,517,888 - 41,518,172
singlet/doubletsinglet
Overlap genenone
Upstream gene9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495, LOC100042464, EG667566
Downstream gene6720432D03Rik, Sorl1, Sc5d, Tecta, Tbcel, Grik4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071G13.T7 (MSMg01no071_g13.b1)MSMg01-071G13.TJ (MSMg01no071_g13.g1)
ACCAG295199AG295200
length743721
length of high quality
(start - end)
---285 (75 - 359)
definitionCHROMAT_FILE: MSMg01no071_g13.b1 PHD_FILE: MSMg01no071_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:48 2005CHROMAT_FILE: MSMg01no071_g13.g1 PHD_FILE: MSMg01no071_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGTCATAATTTGCGGGCGGCCCACGAANCNNATATTTTCCGCACCGGGGG
AANNCNCANGATTTTCCCAACACGAAGAGAAAAGCANGACCCAACCCCCA
GGCAAAAGCACCANNGGTTTGGACCCCGACAACAAAGNGCAAGGCGNNGA
GGGGAAAAGCCACAACCAAACCACGGGGGACACCGGAGCAGGAGAAGACC
AGGGGGGCGGGGCGGAAGAGACCAGCGGGGGGGGCGGGAGCCGGAGACGC
CTTTACGGGAGGGGAGGGGAGAGGACGCCAGGGGGGAGGGGGGGGGAGGG
GCCGGGAGGAGGGGGGTTTTTTTTTTTACCCGGAAGGGAGAGGGGGGAGG
AGGGGGGGGGGCGCGGAGGGCCCCCCCCCCGGGAGGGAAGGGGAGGGAGG
GAGGGGGGCGGGGGGGGGCCGGGGCGGGCGAGAGAGGAGGACGGGCGGAG
GGGAGAAGAGAGAGAGGAAAAGAGACGAACAACAGAAGAAAGAGACACAA
AAAAAGGAAGAAAAACAAACAAAAAAAAGAAAAAAAAAGAAAAGAAAAAA
ACGAAAACAAAAAAAAGGACAGAACAGACGAAGAGAGCGGGCACAGAAGA
AGACAAAAAAAAAAACACAAAAAAAAAAAACAAAAGAACAGAAAAAAACA
CAATATGACACGCATTTTTTTTTTTGCGGGGGGGGAATAAGCAAGAAAGA
AGAACAACGAAAAAAAAAAAAAAACAAAACACTAAAAAGAAAA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATACATTGAGTATCATTCCAGTTAC
ATGCATGGAATATCATGTTAGCTCACCTGATGGTAGCCGAGTGTCAAAAC
AACAGTAGACAATAACAGTTCTCTGAAAGAAAATATGTGAACATTCATGC
TGAACCCTATACGTATAATGTGACAAATGTTTTAAAGGTTAAGAAATGCA
AAGTTAGCTTCCGGTCCATTTTGGCTGGACTGCCCTATAAGTTACTTAAA
ATGCTTTGACCTTCATAACTTTTCATGTTGTTGAAGAAGACTTTGTGTCC
TCTTTGTAAGAGAAGGACCCTCACTTATTAACCTCTTGCCTTGTATCAAG
CATCTTACAAACCTTGAGAGCTACCTGAATGCTGCTTTATTTTGTTTTAC
CTTCAGCATCATGGTCAGACTTTTGAGCTCCATTTATAGATGAAAAAAAT
GGATTTCATTTAAATATGTGTCCTAGACCTATCTTATAGAATTTTGAAAA
GATGTGAACCTTGAGGGTGATTGTTAGTAAAATTAATTAAGTATGCCCCC
TGAGAAGGGTTGAATAAATTTGTTCCCCATACAACTTCGTTGGTATTAAT
GTTTGTCCCCCTGACGAATGTTCTTTATCTATCACCGTCTGCTCCATGTA
CCAAAAATGCAGACCTGAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_g13.g1 MSMg01no071_g13.g1 CHROMAT_FILE:
MSMg01no071_g13.g1 PHD_FILE: MSMg01no071_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:48 2005
         (285 letters)



>mm_chr9_41517688_41518372
          Length = 685

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catacattgagtatcattccagttacatgcatggaatatcatgttagctcacctgatggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 catacattgagtatcattccagttacatgcatggaatatcatgttagctcacctgatggt 426

                                                                       
Query: 61  agccgagtgtcaaaacaacagtagacaataacagttctctgaaagaaaatatgtgaacat 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 425 agccgagtgtcaaaacaacagtagacaagaacagttctctgaaagaaaatatgtgaacat 366

                                                                       
Query: 121 tcatgctgaaccctatacgtataatgtgacaaatgttttaaaggttaagaaatgcaaagt 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tcatgctgaaccctatacgtagaatgtgacaaatgttttaaaggttaagaaatgcaaagt 306

                                                                       
Query: 181 tagcttccggtccattttggctggactgccctataagttacttaaaatgctttgaccttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tagcttccggtccattttggctggactgccctataagttacttaaaatgctttgaccttc 246

                                                        
Query: 241 ataacttttcatgttgttgaagaagactttgtgtcctctttgtaa 285
           | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agaacttttcatgttgttgaagaagactttgtgtcctctttgtaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)