BAC Information

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BAC

Clone NameMSMg01-072G18
Chromosome9 (Build37)
Map Location 25,882,246 - 25,882,796
singlet/doubletsinglet
Overlap genenone
Upstream geneHerpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
Downstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072G18.T7 (MSMg01no072_g18.b1)MSMg01-072G18.TJ (MSMg01no072_g18.g1)
ACCAG295969AG295970
length704715
length of high quality
(start - end)
608 (41 - 648)368 (71 - 438)
definitionCHROMAT_FILE: MSMg01no072_g18.b1 PHD_FILE: MSMg01no072_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:10 2005CHROMAT_FILE: MSMg01no072_g18.g1 PHD_FILE: MSMg01no072_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CACCATGGCGGCCTAAGTACCATTTGGAAAGGGCATTTAGTGCATTTATT
GAACCTAGACTTTGTGTCAGGCTGTAGGCTCAGGTTTTGGCATTTTTCTT
AAAGGATCAAATCTTATGTATGTGAGAAAACTGAGATTTTTCAGGTCCTG
TCCATGTCAACTAGTGTGGACACATCTCACTCAGGAGGGAATCTGGGACC
CAGCATTGATTAGTGTCAAAGTAAGGCACCAACCAATACAACTTCCATGC
AAGTGAAGAGCTCTTGGTGCTTCCTTCTGGAAATTTGTTGAGAATATTTT
TCATTAAGCTAGGACATGGTAGTAGCCTCAAGAAAAACACAGCTGGGCTG
GTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCG
AAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCCGTAATGAG
ATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACA
TATAATAAATAAATAAATCTTTAAAAAAAAAAGAAAAGAATAAAGAAAGA
AAAACACAGCTAAAGGCTGTGTTCCTTGCATCTTTATCATCTTGACAAGT
CCCTAAAAACAGTATCCATTGGACTTTTATTTTGCCTTGTTTGTTCCTTG
ACTA
TGATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTCTTTAAT
GGGGTTATTTGATTTTCTGGAGTTCACCTTCTTGAGTTCTTAATATATAT
ATATATATGTATATATATATATATATATATATATATATTGGATATTAGTC
TCCTATCTGATTTAGGGTAGGTAAAAATCCTTTCCCAATCTGTTGGTGGC
TTTTTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTT
TATGACATCCCATTTGTCAATTCTCCATCTTACAGCACAAGCCATTGCTG
TTTTATTCAGAAATCTTTCCCCTGTGCCCATATCTTCGAGGTTTTTCCCC
ATTGCTCCTCTATAAGTTTCAGTATCTCTGTTTTTATGTGGAGCTCCCTG
ATCCACTTAGTTTTGACCTTAGTAAAAGGATATAGGAATGGATCAATTTG
CATTCTTTCTAATGATGACCACCAGTTTGTGCCCTTACCATTTTGCTGGA
AAGGCTATTCTTTTTTTCCCCGGTGAGTCTTCTTCCGACCCGTATAAATG
CTTTTTGTGACTTTGCGGGGCACCTCCGTGCTTTTTCGTTGCTTTTCCCT
TCCCTTCTTTTTTGGTTCATTCTCCCCCTTTTGCTTACCCCACCGCCCCC
CTCTCTCTGTTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_g18.b1 MSMg01no072_g18.b1 CHROMAT_FILE:
MSMg01no072_g18.b1 PHD_FILE: MSMg01no072_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:10 2005
         (608 letters)



>mm_chr9_25882243_25883250
          Length = 1008

 Score =  998 bits (516), Expect = 0.0
 Identities = 544/554 (98%), Gaps = 3/554 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaccatggcggcctaagtaccatttggaaagggcatttagtgcatttattgaac 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gaattccaccatggcgggctaagtaccatttggaaagggcatttagtgcatttattgaac 495

                                                                       
Query: 65  ctagactttgtgtcaggctgtaggctcaggttttggcatttttcttaaaggatcaaatct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctagactttgtgtcaggctgtaggctcaggttttggcatttttcttaaaggatcaaatct 435

                                                                       
Query: 125 tatgtatgtgagaaaactgagatttttcaggtcctgtccatgtcaactagtgtggacaca 184
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tatgtatgtgggaaaactgagatttttcaggtcctgtccatgtcaactagtgtggacaca 375

                                                                       
Query: 185 tctcactcaggagggaatctgggacccagcattgattagtgtcaaagtaaggcaccaacc 244
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 374 tctcactcaggagggaatctgggacccagcattgattagtgtcaaactaaggcaccaacc 315

                                                                       
Query: 245 aatacaacttccatgcaagtgaagagctcttggtgcttccttctggaaatttgttgagaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aatacaacttccatgcaagtgaagagctcttggtgcttccttctggaaatttgttgagaa 255

                                                                       
Query: 305 tatttttcattaagctaggacatggtagtagcctcaagaaaaacacagctgggctggtga 364
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tatttttcattaggctaggacatggtagtagcctcaagaaaaacacagctgggctggtga 195

                                                                       
Query: 365 gatggctcagtgggtaagagcacccgactgctcttccgaaggtccgaagttcaaatccca 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 194 gatggctcagtgggtaagagcacccgactgctcttccgaaggtccgaagttcaaattcca 135

                                                                       
Query: 425 gcaaccacatggtggctcacaaccacccgtaatgagatctgatgccctcttctggtgtgt 484
           || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 134 gcgaccacatggtggctcacaaccacctgtaatgagatctgatgccctcttctggtgtgt 75

                                                                       
Query: 485 ctgaagacagctacagtgtacttacatataataaataaataaatctttaaaaaaaaaaga 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 74  ctgaagacagctacagtgtacttacatataataaataaataaatctttaaaaaaaaaa-a 16

                         
Query: 545 aaagaataaagaaa 558
           ||||||  ||||||
Sbjct: 15  aaagaa--aagaaa 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)