BAC Information

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BAC

Clone NameMSMg01-073B07
Chromosome9 (Build37)
Map Location 84,468,414 - 84,468,734
singlet/doubletsinglet
Overlap genenone
Upstream geneSh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150, Bckdhb, EG666669
Downstream geneLOC666672, BC023892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073B07.T7 (MSMg01no073_b07.b1)MSMg01-073B07.TJ (MSMg01no073_b07.g1)
ACCAG296467AG296468
length693697
length of high quality
(start - end)
547 (42 - 588)372 (77 - 448)
definitionCHROMAT_FILE: MSMg01no073_b07.b1 PHD_FILE: MSMg01no073_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:02 2005CHROMAT_FILE: MSMg01no073_b07.g1 PHD_FILE: MSMg01no073_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCAATTTACCTCTATAACTCATTTTTTGATTAGGTTTGGATTTTTGATG
GTTAGCTTCTTGAGTTCTTTATACACTTTGGATATTACCCCTTTATCAGA
TGTAGGGTTAGTGAAGAATTTTTTCCCAATCTGTAGGTTGCTGATTTGTC
TTAGTGCCTAGGTCTTTTCCCGTACAGAACCTTACAAAGCTTTTTGGATT
TTATCTGATTTACTATGTACATGGGTGCTTTAGGTGTCTTCTAAATAAAA
ATCCCATTCTGATGATGCTGAAAGTCCACTTATGCTTTTGCAGGAGGTAT
TTTTAATTTTAGATCTTATATTTAAGATTTTAATCAATTTTGGATTGATT
TTTACAACTGGTAAGATATAGGTTATCTGGTTCCACTTTTGTTCATGGGT
GTTCACTCTTCTTAACATTTTGGAAAAGACTGCAACTCTTCTTTGTCTGC
ATTTATATGAAAACCACTCTGCATTGCCGCAACCTTGAAGGATGTTTTGA
AATCAGCTATCATATGCTAATCAGCTTATTATTTTAGTAAGTTATCCTTG
TGATGTAGGCTACATACTACTTTTAGTAGCCTATTCTACTTATTACAAGA
ATTCCATTTCTACTCTTACAGATATTTTAATAAATATACAGTT
NCCCCGATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCGATCTTTCCAGACTTTTATCAT
GAATGGGTGTTGGATCTTGTCGAATGCTTTTTCCGCATCTAACGAGATGA
TCATGTGGTTTTTGTCTTTGAGTTTGTTTATATACTGGATTACGTTGATG
GATTTCCGTATATTGAACCATCCCTGCATCCCTGGGATGAAACCTACTTG
TTCAGGATGGATGATTGTTTTGATGTGTTCTTGGATTCGGTTAGCAAGAA
CTTTATTGATGATTTTTGCATCATTATTCATAAGGGATATTGGTCTGAAG
TTCTCTATCTTTTTGGGGCCTTTTTGTGGTTTAGGTATCAGAGTAATTGT
GGCTTCATAGAATGAGTTGGGTAGAGTACCTTCTGTTTCTATTTTGTGCA
ATAGCTTGTGAAGAACTGGGATTAGATCTTCTTTGAAGGTCTGATAGAAC
TCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGCTGTGAGACTATT
GACGACTGCTTTGATTTCTTTGTGCCACATCGGGCTGTTTAGATCATTAA
CCTGACCTTGATTCAACTTTGCCACCTGCTACCTGTCTAAAAACTTCCCC
ATTTCATCCATGTTCTCCAGCTTTGGTTGAGAATACCCTTTTTGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_b07.b1 MSMg01no073_b07.b1 CHROMAT_FILE:
MSMg01no073_b07.b1 PHD_FILE: MSMg01no073_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:02 2005
         (547 letters)



>mm_chr9_84467788_84468734
          Length = 947

 Score =  605 bits (313), Expect = e-177
 Identities = 319/321 (99%)
 Strand = Plus / Minus

                                                                       
Query: 227 tacatgggtgctttaggtgtcttctaaataaaaatcccattctgatgatgctgaaagtcc 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 tacatgggtgctttaggtgtcttctaaataaaaatcccattctgatgatgctgaaagtcc 888

                                                                       
Query: 287 acttatgcttttgcaggaggtatttttaattttagatcttatatttaagattttaatcaa 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 acttatgcttttgcaggaggtatttttaattttagatcttatatttaagattttaatcaa 828

                                                                       
Query: 347 ttttggattgatttttacaactggtaagatataggttatctggttccacttttgttcatg 406
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 827 ttttggattgatttttacaactggtaagatataggttatctgattccacttttgttcatg 768

                                                                       
Query: 407 ggtgttcactcttcttaacattttggaaaagactgcaactcttctttgtctgcatttata 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ggtgttcactcttcttaacattttggaaaagactgcaactcttctttgtctgcatttata 708

                                                                       
Query: 467 tgaaaaccactctgcattgccgcaaccttgaaggatgttttgaaatcagctatcatatgc 526
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 707 tgaaaaccactctgcattgccgcaaccttgcaggatgttttgaaatcagctatcatatgc 648

                                
Query: 527 taatcagcttattattttagt 547
           |||||||||||||||||||||
Sbjct: 647 taatcagcttattattttagt 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)