BAC Information

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BAC

Clone NameMSMg01-073D11
Chromosome9 (Build37)
Map Location 96,582,945 - 96,583,148
singlet/doubletsinglet
Overlap genenone
Upstream genePcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1, Gk5, Tfdp2, 1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2
Downstream geneZbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971, Trim42, Clstn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073D11.T7 (MSMg01no073_d11.b1)MSMg01-073D11.TJ (MSMg01no073_d11.g1)
ACCAG296570AG296571
length704714
length of high quality
(start - end)
204 (65 - 268)380 (73 - 452)
definitionCHROMAT_FILE: MSMg01no073_d11.b1 PHD_FILE: MSMg01no073_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:13 2005CHROMAT_FILE: MSMg01no073_d11.g1 PHD_FILE: MSMg01no073_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGCGGCCGCTAAACGACTCCTATTCATTATTGATCCGCGGAATTCATT
ATGTTCCACAAATGGCTTCAAACTCAGTTCTGCCTGTCTCTACCTCCTGA
GTGCTGGGATTAAATGAATCTGCCATTATGTCTGGTCCCTATTTTAATAT
CACAGTTTATGAGTCCTAAGCATGTAAGTTCCATGAAATACACGCAAGGA
AACAGTTATGGTGAATGAGTGTTGTATGTAACAAAGCCATGACTCACAAA
GATGAAATAGCTACACAGAAGAATTAACAGTAAGTCACTTACAAAAGACA
CTTAATGTAGGAATTTTCTATTTTAATCAAGCAAAACAAATTTATATTCA
TTATCTCTAAAAATAAAATTAGACCTTTCCAACCCTTAACATCTGCATTT
AATCATATCTCCTAACCAAAATACAGATGCGAAGACAGTGACTTACAGTA
TATCTCGTACGGCATACAGTATGTCCACTGTTTACACTTCAGCTCTACTT
GTTCTTTACGTACTCGATGCATACTTACTCTCCAGCCATAACATTTATAC
AGTCTACAACAACAAAAACATAACCAGTTGTCCTAAAATGGCTCTTCTAT
ACATTGTATAGACTGTTCCATTTACTAAGTCTTGTATTCTATCCCAATAT
ACACCCCTCCCTGAAACTAAACCCGCTATCTCTCTTTCTTACCAATAACA
TATT
CACTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTGATCATCTTGTAAAAACCCACACCA
GAGTCTCTGTTCAGAGGACCCAGCCTCCAGCTGTGGCTACTACATAAGGA
TTTTGTACAAGAAAAATAAAAGAATTAAGTCTGCTAAAAAAAAAAAGAAA
GAAAGAAAGAAGAAAGAAAAAGAAAGAAAGAAAAGCGAAGCAATTCTATT
AAAAGTAGGAACTAGACAAGGCTATCCACTCTCTGCATTCCTAAGCGGTC
AGAAGAGAATAAGACAAGAGAGGGAAATAAAAGGGACACAGATAAGAAAT
GGGGTCCAAGTAACCCACTCTTTGGATTGTATGATTCTGTACATAATAGA
CCCTGAAAATTCCACCAGAAAACTCCTAGACCTGACAACCACTTTCATCA
AAGCAGCAAGATACAAAACCAACATACACATAAAAAAATCAGTAATTTTT
CTATTTACCAGTGAATAACACACAAAGAGAGATCAAGGAAACAATTCCAT
TGACAATAGTTTAAAGATAATAAAATAGGAGAAAGCCCACACAAGGAGGT
AAAGGTGGCCTCCGCTCTGAGAACCTTATAACACGGAAAATGTCGAGGAA
AATGTTCGAATAAGGAAAGATGCTCATGTACTGTAAGACTCAGTATTATG
AAAGGGCCATCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_d11.b1 MSMg01no073_d11.b1 CHROMAT_FILE:
MSMg01no073_d11.b1 PHD_FILE: MSMg01no073_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:13 2005
         (204 letters)



>mm_chr9_96582745_96583348
          Length = 604

 Score =  356 bits (184), Expect = e-103
 Identities = 199/204 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcttcaaactcagttctgcctgtctctacctcctgagtgctgggattaaatgaatctgcc 60
           |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctttaaactcagttctgcctgcctctacctcctgagtgctgggattaaatgaatctgcc 260

                                                                       
Query: 61  attatgtctggtccctattttaatatcacagtttatgagtcctaagcatgtaagttccat 120
           | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 actatgtctggtccctattttaatatcacagtttatgagtcctaagcatgtaggttccat 320

                                                                       
Query: 121 gaaatacacgcaaggaaacagttatggtgaatgagtgttgtatgtaacaaagccatgact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaatacacgcaaggaaacagttatggtgaatgagtgttgtatgtaacaaagccatgact 380

                                   
Query: 181 cacaaagatgaaatagctacacag 204
           || |||||||||||||||||||||
Sbjct: 381 cataaagatgaaatagctacacag 404


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)