BAC Information

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BAC

Clone NameMSMg01-073E07
Chromosome9 (Build37)
Map Location 48,408,198 - 48,408,716
singlet/doubletsinglet
Overlap geneNnmt
Upstream geneCadm1, LOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402
Downstream geneZbtb16, Htr3a, Htr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5, EG235327, Drd2, Ankk1, Ttc12, Ncam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073E07.T7 (MSMg01no073_e07.b1)MSMg01-073E07.TJ (MSMg01no073_e07.g1)
ACCAG296609AG296610
length711714
length of high quality
(start - end)
318 (48 - 365)513 (77 - 589)
definitionCHROMAT_FILE: MSMg01no073_e07.b1 PHD_FILE: MSMg01no073_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:17 2005CHROMAT_FILE: MSMg01no073_e07.g1 PHD_FILE: MSMg01no073_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTGTTTAGCTCTGTACCCCATTTTTTAATTGGGCTGTTTGGG
TTGTTGGTGTCTAACTTCTTGAGTTCTTATATATTTTGGATATTAACCCT
CTATAAGATGTAGGGTTTGTGAAGATCTTTTCCCATTCTGCCAGCTGCCA
TTTTCTCCTATTGACAGTGCCCTTTACTTTATAGAGCTTTTCAGTTTCTT
GAGGTCCCGTTTATTAATTGCTGATCTTAGTGCCTGAGATATAGGTGTTC
TGTTCAGGAAATTGTCTCCTATGCCAATGAGTTCAAGGTTGAAACCTACT
TTCTCTTCTTTTTTTTATTCCCCCCCCCCACTTATTTATTTATTTATTTA
TGTGAGTACACTGTAGCTGCACAGATAGAAGTGAGCCTTCATGTGGTTGT
TAGGAATTGAATTTTTAGGATGTCTGCATGCTCTGGTCGGCCCCACTCGC
TCCGGTCAACTCCACCTACTCAGTCCCTGCTTGCTCGAGCCCAAAAATTT
ATTTATTAATATACACACATACTCTGTACGCTGACCAGATGCACCTGAAA
AGGCTGTCAGGTCTCATTATGGTTGGTTGTGACTCACCTTGTTGTTTCTG
GGATTTGAATTCTTGACCTTCGGAAGAGCAAATCATGCTCCTACCCTCTG
ATCCTCTCCCG
NNCCGATGAAGNTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCCAAGCACCCACATTTGGGT
AGCTTACACACAGTACCTGTAACTCCAGTTTTAGAGAATCCCTCTTCTGG
ATTCTAAGGCTACCCACAGACACACACACACACACACACACACACACACA
CACACACACACACACACACCTGCACGTATAAAAAAAAAGGAACAGAAATT
TAGAAGAGAAATCATGGAAAAAATGTGAGCTAGCCTTTAGCCCCTTGGAA
CACTTTGCTTAGCCTTGGGATCTCCAGATTAGCAGCTTCAATGTATTCTG
TAGCAGTATGTGTGAAATGCAAATTCTCGGGTTGCAGAGATGGCTCAGTG
CCTAAGAACACTGGCTGCTCTTCCAGAGAACCCAGTTCCAATTCCCAACA
TCCACATGGTGTTAATTACTGTCTGTTATTACTCCAGTTCCAGAGGATCT
TACACCCTCTTCTGGCCTCCCAAGACATTAGACACACATGCTGGTGCTCA
GACATACACTCAAGCAAAACACCTATAGATGCTTGTTTGCTCTGTTTTGT
TTGTTTTAAGAAGGAGAAAAGCAGACTTTTACACCTCACTGACTGCGCAC
AGAGCTTGGTTTCCTACTTTCTATGACATCTGCTGAGGTGACCATAAGGA
TAGGTGGAGAAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_e07.g1 MSMg01no073_e07.g1 CHROMAT_FILE:
MSMg01no073_e07.g1 PHD_FILE: MSMg01no073_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:17 2005
         (513 letters)



>mm_chr9_48408066_48408978
          Length = 913

 Score =  969 bits (501), Expect = 0.0
 Identities = 512/519 (98%), Gaps = 6/519 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttccaagcacccacatttgggtagcttacacacagtacctgtaactccagttttagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 agttccaagcacccacatttgggtagcttacacacagtacctgtaactccagttttagag 592

                                                                       
Query: 61  aatccctcttctggattctaaggctacccacag------acacacacacacacacacaca 114
           |||||||||||||||||||||||||||||||||      |||||||||||||||||||||
Sbjct: 591 aatccctcttctggattctaaggctacccacagacacacacacacacacacacacacaca 532

                                                                       
Query: 115 cacacacacacacacacacacacacacacctgcacgtataaaaaaaaaggaacagaaatt 174
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 531 cacacacacacacacacacacacacacacctgcacgtatgaaaaaaaaggaacagaaatt 472

                                                                       
Query: 175 tagaagagaaatcatggaaaaaatgtgagctagcctttagccccttggaacactttgctt 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tagaagagaaatcatggaaaaaatgtgagctagcctttagccccttggaacactttgctt 412

                                                                       
Query: 235 agccttgggatctccagattagcagcttcaatgtattctgtagcagtatgtgtgaaatgc 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 agccttgggatctccagattagcagcttcaatgtattctgtagcagtatgtgtgaaatgc 352

                                                                       
Query: 295 aaattctcgggttgcagagatggctcagtgcctaagaacactggctgctcttccagagaa 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aaattctcgggttgcagagatggctcagtgcctaagaacactggctgctcttccagagaa 292

                                                                       
Query: 355 cccagttccaattcccaacatccacatggtgttaattactgtctgttattactccagttc 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cccagttccaattcccaacatccacatggtgttaattactgtctgttattactccagttc 232

                                                                       
Query: 415 cagaggatcttacaccctcttctggcctcccaagacattagacacacatgctggtgctca 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 cagaggatcttacaccctcttctggcctcccaagacattagacacacatgctggtgctca 172

                                                  
Query: 475 gacatacactcaagcaaaacacctatagatgcttgtttg 513
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gacatacactcaagcaaaacacctatagatgcttgtttg 133


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 88
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)